JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXW10B_chr17_15578886_15624704	0/0	c0053	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0054	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0055	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0056	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0057	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0058	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0059	2259	1	0	0	1	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0060	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10B_chr17_15578886_15624704	0/0	c0061	2259	1	1	0	0	0	0	copy fasta	FBXW10B	chr17	15578886	15624704
FBXW10_chr17_18739054_18784349	1/1	c0001	3159	124	26	17	56	6	17	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0002	3159	71	24	27	9	5	6	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0003	3159	25	3	2	20	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0004	3159	25	3	12	6	2	2	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0005	3159	24	8	0	13	1	2	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0006	3159	23	2	0	18	0	3	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0007	3159	22	2	1	16	0	3	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0008	3159	20	7	9	0	1	3	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0009	3159	16	6	5	0	0	5	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0010	3159	7	3	2	2	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0011	3159	5	4	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0012	3159	3	0	0	3	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0013	3159	2	0	0	2	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0014	3159	2	2	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0015	3159	1	0	0	0	1	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0016	3159	1	0	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0017	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0018	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0019	3159	1	0	0	0	0	1	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0020	3159	1	0	0	0	0	1	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0021	3159	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0022	3159	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0023	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0024	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0025	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0026	3159	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0027	3159	1	1	0	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0028	3159	1	0	1	0	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0029	3159	1	0	0	0	0	1	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0030	3159	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW10_chr17_18739054_18784349	0/0	c0031	3159	1	0	0	1	0	0	copy fasta	FBXW10	chr17	18739054	18784349
FBXW11_chr5_171856549_172011638	1/1	c0001	1692	119	44	28	31	2	12	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	c0002	1692	25	23	2	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	c0003	1692	12	10	2	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	c0004	1692	1	1	0	0	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW11_chr5_171856549_172011638	0/0	c0005	1692	1	0	0	1	0	0	copy fasta	FBXW11	chr5	171856549	172011638
FBXW12_chr3_48367219_48399725	0/1	c0001	1395	168	39	23	73	10	22	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0002	1395	130	25	27	63	4	11	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0003	1395	12	8	4	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	1/0	c0004	1395	8	7	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0005	1395	6	0	0	0	0	6	copy fasta	FBXW12	chr3	48367219	48399725