JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXW12_chr3_48367219_48399725	0/0	c0006	1395	5	0	5	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0007	1395	3	0	3	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0008	1395	3	0	0	0	2	1	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0009	1395	2	2	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0010	1395	1	1	0	0	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0011	1395	1	0	0	1	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW12_chr3_48367219_48399725	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	FBXW12	chr3	48367219	48399725
FBXW2_chr9_120751974_120798416	1/1	c0001	1365	323	78	57	155	11	20	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	c0002	1365	3	0	1	0	2	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	c0003	1365	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	c0004	1365	1	1	0	0	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	c0005	1365	1	0	0	1	0	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW2_chr9_120751974_120798416	0/0	c0006	1365	1	0	0	0	1	0	copy fasta	FBXW2	chr9	120751974	120798416
FBXW4_chr10_101605666_101700170	1/1	c0001	1704	141	49	27	47	5	11	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	c0002	1704	31	7	11	5	5	3	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	c0003	1704	18	1	1	16	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	c0004	1704	10	8	2	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	c0005	1704	9	0	3	6	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW4_chr10_101605666_101700170	0/0	c0006	1704	1	1	0	0	0	0	copy fasta	FBXW4	chr10	101605666	101700170
FBXW5_chr9_136935435_136949738	1/1	c0001	1701	389	82	76	173	16	40	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0002	1701	10	0	3	0	1	6	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0003	1701	6	0	0	6	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0004	1701	3	3	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0005	1701	3	3	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0006	1701	2	0	0	0	0	2	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0007	1701	2	1	1	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0008	1701	2	0	2	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0009	1701	1	0	0	0	0	1	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0010	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0011	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0012	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0013	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0014	1701	1	0	1	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0015	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0016	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0017	1701	1	0	1	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0018	1701	1	1	0	0	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0019	1701	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0020	1701	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0021	1701	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0022	1701	1	0	0	0	1	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0023	1701	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0024	1701	1	0	0	0	0	1	copy fasta	FBXW5	chr9	136935435	136949738
FBXW5_chr9_136935435_136949738	0/0	c0025	1701	1	0	0	1	0	0	copy fasta	FBXW5	chr9	136935435	136949738
FBXW7_chr4_152315544_152541092	1/1	c0001	2124	264	57	42	133	6	24	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	c0002	2124	3	3	0	0	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW7_chr4_152315544_152541092	0/0	c0003	2124	1	0	0	1	0	0	copy fasta	FBXW7	chr4	152315544	152541092
FBXW8_chr12_116905950_117036148	0/1	c0001	1797	129	20	18	62	4	24	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0002	1797	86	34	7	37	1	7	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0003	1797	24	21	1	0	0	2	copy fasta	FBXW8	chr12	116905950	117036148