JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FBXW8_chr12_116905950_117036148	0/0	c0004	1797	12	0	0	12	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0005	1797	6	6	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0006	1797	6	0	5	0	0	1	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0007	1797	6	6	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0008	1797	4	1	2	0	1	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0009	1797	3	0	0	0	0	3	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0010	1797	2	1	1	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0011	1797	2	0	0	2	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0012	1778	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	1/0	c0013	1797	1	0	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0014	1797	1	0	0	1	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0015	1797	1	0	0	0	0	1	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0016	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0017	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0018	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0019	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0020	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW8_chr12_116905950_117036148	0/0	c0021	1797	1	1	0	0	0	0	copy fasta	FBXW8	chr12	116905950	117036148
FBXW9_chr19_12683916_12701631	1/1	c0001	1377	308	35	65	150	17	39	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0002	1377	29	28	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0003	1377	17	15	2	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0004	1377	12	12	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0005	1377	7	0	0	7	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0006	1377	2	2	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0007	1377	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0008	1377	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0009	1377	1	0	0	1	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0010	1377	1	0	0	0	0	1	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0011	1377	1	0	0	1	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0012	1377	1	0	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0013	1377	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0015	1377	1	0	1	0	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0016	1377	1	0	0	0	1	0	copy fasta	FBXW9	chr19	12683916	12701631
FBXW9_chr19_12683916_12701631	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	FBXW9	chr19	12683916	12701631
FCAMR_chr1_206952967_206975460	1/1	c0001	1734	203	27	42	99	6	27	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0002	1734	90	17	13	50	3	7	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0003	1734	19	0	5	14	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0004	1734	18	16	2	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0005	1734	18	0	0	18	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0006	1734	11	9	2	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0007	1734	9	9	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0008	1734	7	7	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0009	1734	3	0	0	3	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0010	1734	2	1	0	0	0	1	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0011	1734	2	2	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0012	1734	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0013	1734	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0014	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0015	1734	1	0	0	0	0	1	copy fasta	FCAMR	chr1	206952967	206975460