JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCAMR_chr1_206952967_206975460	0/0	c0016	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0017	1734	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0018	1734	1	0	0	1	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0019	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0020	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0021	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0022	1734	1	1	0	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0023	1734	1	0	0	0	1	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0024	1734	1	0	1	0	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAMR_chr1_206952967_206975460	0/0	c0025	1734	1	0	0	1	0	0	copy fasta	FCAMR	chr1	206952967	206975460
FCAR_chr19_54869235_54896420	0/1	c0001	864	190	41	32	81	6	29	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0002	864	116	13	27	52	10	14	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0003	864	49	28	14	3	1	3	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0004	864	38	5	2	29	1	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0005	864	22	4	8	9	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0006	864	10	0	0	10	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0007	864	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0008	864	2	0	0	2	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0009	864	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0010	864	2	2	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0011	864	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0012	864	1	0	0	0	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0013	864	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0014	864	1	0	0	1	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0015	864	1	0	0	1	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0016	864	1	0	0	0	0	1	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0017	864	1	0	1	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCAR_chr19_54869235_54896420	0/0	c0018	864	1	1	0	0	0	0	copy fasta	FCAR	chr19	54869235	54896420
FCER1A_chr1_159297336_159313202	1/1	c0001	774	405	85	71	185	13	49	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0002	774	20	0	0	20	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0003	774	10	0	0	9	0	1	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0004	774	8	0	0	8	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0005	774	2	2	0	0	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0006	774	2	0	1	0	1	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1A_chr1_159297336_159313202	0/0	c0007	774	1	1	0	0	0	0	copy fasta	FCER1A	chr1	159297336	159313202
FCER1G_chr1_161210295_161224245	1/1	c0001	261	447	90	76	217	18	44	copy fasta	FCER1G	chr1	161210295	161224245
FCER1G_chr1_161210295_161224245	0/0	c0002	261	1	0	0	1	0	0	copy fasta	FCER1G	chr1	161210295	161224245
FCER2_chr19_7683776_7707131	1/1	c0001	966	227	34	47	115	11	18	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0002	966	63	22	8	12	4	17	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0003	966	60	21	6	26	2	5	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0004	966	40	6	17	16	0	1	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0005	966	31	4	2	22	0	3	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0006	966	11	2	1	4	0	4	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0007	966	5	5	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0008	966	4	0	3	0	1	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0009	966	4	3	0	0	0	1	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0010	966	3	0	0	3	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0011	966	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0012	966	1	0	0	1	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0013	966	1	1	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131