JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCER2_chr19_7683776_7707131	0/0	c0014	966	1	1	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0015	966	1	0	0	1	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0016	966	1	0	1	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0017	966	1	1	0	0	0	0	copy fasta	FCER2	chr19	7683776	7707131
FCER2_chr19_7683776_7707131	0/0	c0018	966	1	0	0	0	0	1	copy fasta	FCER2	chr19	7683776	7707131
FCF1_chr14_74708144_74743620	1/1	c0001	597	357	93	71	151	14	26	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	c0002	597	2	0	0	2	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	c0003	597	2	0	0	0	0	2	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	c0004	597	1	1	0	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	c0005	597	1	0	1	0	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCF1_chr14_74708144_74743620	0/0	c0006	597	1	0	0	1	0	0	copy fasta	FCF1	chr14	74708144	74743620
FCGR1A_chr1_149777694_149796675	1/1	c0001	1125	319	58	57	152	15	35	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0002	1125	59	13	9	26	2	9	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0003	1125	7	6	1	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0004	1125	7	5	0	2	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0005	1125	5	0	0	5	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0006	1125	4	4	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0007	1125	3	2	0	0	0	1	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0008	1125	2	2	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0009	1125	2	2	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0010	1125	1	1	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0012	1125	1	0	0	1	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0013	1125	1	0	0	0	1	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0014	1125	1	0	1	0	0	0	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR1A_chr1_149777694_149796675	0/0	c0015	1125	1	0	0	0	0	1	copy fasta	FCGR1A	chr1	149777694	149796675
FCGR2A_chr1_161500457_161524829	1/0	c0001	954	196	25	33	119	3	15	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/1	c0002	954	145	48	31	38	9	18	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0003	954	63	1	7	49	0	6	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0004	954	13	1	1	10	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0005	954	12	0	6	0	2	4	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0006	954	9	9	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0007	954	5	5	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0008	954	3	1	1	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0009	954	2	0	0	0	0	2	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0010	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0011	954	1	0	1	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0012	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0013	954	1	0	0	0	0	1	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0014	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0015	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0016	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2A_chr1_161500457_161524829	0/0	c0017	954	1	1	0	0	0	0	copy fasta	FCGR2A	chr1	161500457	161524829
FCGR2B_chr1_161658143_161683654	1/1	c0001	933	226	28	58	107	4	27	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0002	933	73	27	6	36	0	4	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0003	933	35	8	6	11	7	3	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0004	933	30	13	8	2	1	6	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0005	933	9	9	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0006	933	4	0	0	4	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0007	933	3	3	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654