JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCGR2B_chr1_161658143_161683654	0/0	c0008	933	2	2	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0009	933	2	0	0	1	0	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0010	933	2	0	0	2	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0011	933	1	0	0	1	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0012	933	1	1	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0013	933	1	0	0	1	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0014	933	1	0	1	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0015	933	1	1	0	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0016	933	1	0	1	0	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0017	933	1	0	0	1	0	0	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR2B_chr1_161658143_161683654	0/0	c0018	933	1	0	0	0	0	1	copy fasta	FCGR2B	chr1	161658143	161683654
FCGR3A_chr1_161536759_161554818	1/1	c0001	765	290	51	46	152	11	28	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0002	765	135	38	13	69	1	14	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0003	765	5	0	3	0	1	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0004	765	5	5	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0005	765	4	0	2	0	1	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0006	765	4	4	0	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0007	765	3	0	3	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0008	765	3	0	2	0	0	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0009	765	1	0	0	0	0	1	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0010	765	1	0	0	1	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3A_chr1_161536759_161554818	0/0	c0011	765	1	0	1	0	0	0	copy fasta	FCGR3A	chr1	161536759	161554818
FCGR3B_chr1_161618196_161636176	0/0	c0001	702	179	13	29	118	4	15	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0002	702	123	11	21	59	12	20	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0003	702	17	13	2	0	0	2	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0004	702	7	7	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0005	702	6	6	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	1/0	c0006	702	4	3	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0007	702	4	4	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0008	702	2	0	0	2	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0009	702	2	2	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0010	702	2	2	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0011	702	2	0	2	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0012	702	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0013	702	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0014	702	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0015	702	1	0	1	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0016	702	1	1	0	0	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0017	702	1	0	0	1	0	0	copy fasta	FCGR3B	chr1	161618196	161636176
FCGR3B_chr1_161618196_161636176	0/0	c0018	702	1	0	0	0	0	1	copy fasta	FCGR3B	chr1	161618196	161636176
FCGRT_chr19_49507661_49531428	1/1	c0001	1098	272	58	49	112	12	39	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0002	1098	57	33	11	10	0	3	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0003	1098	11	3	0	8	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0004	1098	10	0	4	6	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0005	1098	2	0	0	0	0	2	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0006	1098	2	2	0	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0007	1098	1	0	1	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCGRT_chr19_49507661_49531428	0/0	c0008	1098	1	0	1	0	0	0	copy fasta	FCGRT	chr19	49507661	49531428
FCHO1_chr19_17746477_17793561	0/0	c0001	2670	187	48	35	77	5	22	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	1/0	c0002	2670	57	21	8	20	0	7	copy fasta	FCHO1	chr19	17746477	17793561