JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCHO1_chr19_17746477_17793561	0/1	c0003	2670	38	5	12	3	6	11	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0004	2670	34	7	14	4	3	6	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0005	2670	13	0	6	7	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0006	2670	5	5	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0007	2670	3	2	1	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0008	2670	1	0	1	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0009	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0010	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0011	2670	1	0	1	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0012	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0013	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0014	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0015	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0016	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0017	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0018	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0019	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0020	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0021	2670	1	1	0	0	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO1_chr19_17746477_17793561	0/0	c0022	2670	1	0	0	1	0	0	copy fasta	FCHO1	chr19	17746477	17793561
FCHO2_chr5_72951041_73095522	1/0	c0001	2433	115	15	25	57	2	15	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0002	2433	71	24	9	30	1	7	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0003	2433	51	25	10	7	2	7	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/1	c0004	2433	38	2	3	31	1	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0005	2433	5	0	0	5	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0006	2433	1	1	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0007	2433	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0008	2433	1	1	0	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0009	2433	1	0	1	0	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0010	2433	1	0	0	1	0	0	copy fasta	FCHO2	chr5	72951041	73095522
FCHO2_chr5_72951041_73095522	0/0	c0011	2433	1	0	0	0	0	1	copy fasta	FCHO2	chr5	72951041	73095522
FCHSD1_chr5_141634302_141656418	1/0	c0001	2073	298	80	58	118	5	36	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0002	2073	43	2	6	30	1	4	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/1	c0003	2073	14	2	5	0	5	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0004	2073	9	0	0	9	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0005	2073	9	0	2	6	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0006	2073	7	0	5	0	2	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0007	2073	7	0	0	7	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0008	2073	5	0	0	5	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0009	2073	5	1	0	4	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0010	2073	5	0	0	5	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0011	2073	3	3	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0012	2073	3	3	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0013	2073	3	1	2	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0014	2073	3	2	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0015	2073	2	0	2	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0016	2073	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0017	2073	1	0	0	0	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0018	2073	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0019	2073	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418