JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCHSD1_chr5_141634302_141656418	0/0	c0020	2073	1	0	1	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0021	2073	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0022	2073	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0023	2073	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0024	2073	1	1	0	0	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0025	2073	1	0	0	1	0	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0026	2050	1	0	0	0	1	0	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD1_chr5_141634302_141656418	0/0	c0027	2073	1	0	0	0	0	1	copy fasta	FCHSD1	chr5	141634302	141656418
FCHSD2_chr11_72831745_73147318	1/1	c0001	2223	268	60	58	108	10	30	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0002	2223	8	8	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0003	2223	5	5	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0004	2223	5	5	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0005	2223	2	2	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0006	2223	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCHSD2_chr11_72831745_73147318	0/0	c0007	2223	1	1	0	0	0	0	copy fasta	FCHSD2	chr11	72831745	73147318
FCMR_chr1_206898317_206926941	1/1	c0001	1173	288	84	50	128	4	20	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0002	1173	78	9	19	36	8	6	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0003	1173	3	3	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0004	1173	3	0	0	3	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0006	1161	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0007	1173	1	0	0	0	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0010	1173	1	0	0	0	0	1	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0011	1173	1	0	1	0	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCMR_chr1_206898317_206926941	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	FCMR	chr1	206898317	206926941
FCN1_chr9_134898232_134922912	0/0	c0001	981	165	50	19	64	5	27	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	1/1	c0002	981	161	6	39	98	4	12	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0003	981	78	23	16	28	6	5	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0004	981	8	6	0	1	1	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0005	981	6	5	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0006	981	2	2	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0007	981	2	0	0	2	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0008	981	2	0	2	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0009	1036	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0010	981	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0011	981	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0012	981	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0013	981	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0014	981	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0015	981	1	0	0	0	0	1	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0016	981	1	0	1	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0017	981	1	1	0	0	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN1_chr9_134898232_134922912	0/0	c0018	981	1	0	0	1	0	0	copy fasta	FCN1	chr9	134898232	134922912
FCN2_chr9_134875810_134892523	0/0	c0001	942	142	15	22	77	6	22	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	1/0	c0002	942	86	7	19	51	2	6	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/1	c0003	942	85	29	22	14	6	13	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0004	942	68	17	11	34	2	4	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0005	942	50	3	5	42	0	0	copy fasta	FCN2	chr9	134875810	134892523