JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCN2_chr9_134875810_134892523	0/0	c0006	942	9	8	1	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0007	942	5	0	0	5	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0008	942	5	4	1	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0009	942	3	0	0	0	0	3	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0010	942	3	3	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0011	942	2	1	0	1	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0012	942	2	2	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0013	942	2	2	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0014	942	2	2	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0015	942	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0016	942	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0017	942	1	0	0	1	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0018	942	1	0	0	1	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0019	942	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0020	942	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0021	942	1	0	1	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN2_chr9_134875810_134892523	0/0	c0022	942	1	1	0	0	0	0	copy fasta	FCN2	chr9	134875810	134892523
FCN3_chr1_27364110_27379824	1/1	c0001	900	387	87	74	165	14	45	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0002	899	6	3	2	0	0	1	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0003	900	4	0	0	4	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0004	900	4	0	4	0	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0005	900	1	0	0	1	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0006	900	1	1	0	0	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCN3_chr1_27364110_27379824	0/0	c0007	900	1	1	0	0	0	0	copy fasta	FCN3	chr1	27364110	27379824
FCRL1_chr1_157789403_157825120	0/0	c0001	1290	149	7	27	92	6	17	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	1/0	c0002	1290	146	48	19	57	6	15	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0003	1290	68	11	17	33	4	3	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0004	1290	18	18	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0005	1290	6	5	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0006	1290	5	5	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0007	1290	2	0	0	2	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0008	1290	2	0	0	2	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0009	1290	2	2	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0010	1290	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0011	1290	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/1	c0012	1290	1	0	0	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0013	1290	1	0	0	0	0	1	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0014	1290	1	0	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0015	1290	1	0	1	0	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0016	1290	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL1_chr1_157789403_157825120	0/0	c0017	1290	1	0	0	1	0	0	copy fasta	FCRL1	chr1	157789403	157825120
FCRL2_chr1_157740733_157782132	1/1	c0001	1527	360	75	69	168	14	32	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0002	1527	11	11	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0003	1527	3	3	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0004	1527	1	1	0	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0005	1527	1	0	1	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0006	1527	1	0	0	0	0	1	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0007	1527	1	0	1	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0008	1527	1	0	1	0	0	0	copy fasta	FCRL2	chr1	157740733	157782132
FCRL2_chr1_157740733_157782132	0/0	c0009	1527	1	0	0	0	0	1	copy fasta	FCRL2	chr1	157740733	157782132