Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA1_chr9_104776006_104933155	0/0	c0088	6786	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0089	6786	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0090	6786	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0091	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0092	6786	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0093	6786	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0094	6786	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0095	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0096	6786	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0097	6786	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0098	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0099	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0100	6786	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0101	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0102	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0103	6786	1	0	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0104	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0105	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0106	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0107	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0108	6786	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0109	6786	1	0	0	0	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0110	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0111	6786	1	0	0	1	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0112	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0113	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	c0114	6786	1	1	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA2_chr9_137002234_137033237	0/1	c0001	7311	140	41	29	52	5	12	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0002	7311	64	6	20	19	9	10	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0003	7311	11	1	0	5	1	4	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0004	7311	9	0	7	0	2	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0005	7311	6	1	4	0	0	1	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0006	7311	6	6	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0007	7311	5	1	2	0	0	2	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0008	7311	4	4	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0009	7311	4	0	0	4	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0010	7311	3	0	0	3	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0011	7311	3	0	2	0	1	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0012	7311	3	0	0	3	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	1/0	c0013	7311	3	2	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0014	7311	3	3	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0015	7311	3	3	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0016	7311	2	2	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0017	7311	2	0	0	2	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0018	7311	2	0	0	0	0	2	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0019	7311	2	0	0	2	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0020	7311	2	2	0	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0021	7311	2	0	2	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0022	7311	2	0	2	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237
ABCA2_chr9_137002234_137033237	0/0	c0023	7311	2	1	1	0	0	0	copy fasta	ABCA2	chr9	137002234	137033237