Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AFMID_chr17_78182362_78212702	0/0	c0002	912	33	10	0	22	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0003	912	13	0	7	0	1	5	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0004	912	11	10	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0005	912	5	0	2	3	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0006	912	4	0	0	4	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0007	912	4	3	1	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0008	912	3	0	2	0	0	1	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0009	912	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0010	912	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0011	912	1	1	0	0	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0012	912	1	0	0	0	1	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0013	912	1	0	0	0	1	0	copy fasta	AFMID	chr17	78182362	78212702
AFMID_chr17_78182362_78212702	0/0	c0014	912	1	0	0	1	0	0	copy fasta	AFMID	chr17	78182362	78212702
AFM_chr4_73476745_73509001	1/1	c0001	1800	322	62	68	148	12	30	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0002	1800	19	8	2	3	2	4	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0003	1800	5	0	0	5	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0004	1800	4	4	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0005	1800	3	1	2	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0006	1800	2	2	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0007	1800	2	2	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0008	1800	2	0	0	2	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0009	1800	2	0	2	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0010	1800	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0011	1800	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0012	1800	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0013	1800	1	0	0	1	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0014	1800	1	0	0	1	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0015	1800	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFM_chr4_73476745_73509001	0/0	c0016	1800	1	1	0	0	0	0	copy fasta	AFM	chr4	73476745	73509001
AFP_chr4_73431221_73461174	0/1	c0001	1830	328	50	66	161	15	35	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0002	1830	23	21	1	0	0	1	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0003	1830	15	14	1	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	1/0	c0004	1830	4	3	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0005	1830	3	1	1	0	1	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0006	1830	3	0	1	0	0	2	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0007	1830	2	2	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0008	1615	2	0	1	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0009	1830	2	0	1	0	1	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0010	1830	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0011	1830	1	0	0	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0012	1830	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0013	1830	1	0	0	0	0	1	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0014	1830	1	0	0	0	0	1	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0015	1830	1	1	0	0	0	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0016	1830	1	0	0	0	1	0	copy fasta	AFP	chr4	73431221	73461174
AFP_chr4_73431221_73461174	0/0	c0017	1830	1	0	0	1	0	0	copy fasta	AFP	chr4	73431221	73461174
AFTPH_chr2_64519328_64598005	1/1	c0001	2811	262	41	56	124	9	30	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0002	2811	84	35	0	45	1	3	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0003	2811	5	5	0	0	0	0	copy fasta	AFTPH	chr2	64519328	64598005
AFTPH_chr2_64519328_64598005	0/0	c0004	2811	4	0	0	4	0	0	copy fasta	AFTPH	chr2	64519328	64598005