JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCRL3_chr1_157671481_157705769	1/0	c0001	2205	158	25	30	78	4	20	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/1	c0002	2205	155	35	31	75	8	5	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0003	2205	13	4	4	4	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0004	2205	11	0	0	11	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0005	2205	11	11	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0006	2205	7	6	1	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0007	2205	4	0	0	3	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0008	2205	4	4	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0009	2205	3	0	0	3	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0010	2205	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0011	2205	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0012	2205	2	2	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0013	2205	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0014	2205	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0015	2205	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0016	2205	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0017	2205	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0018	2205	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0019	2205	1	0	0	1	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0020	2205	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0021	2205	1	1	0	0	0	0	copy fasta	FCRL3	chr1	157671481	157705769
FCRL3_chr1_157671481_157705769	0/0	c0022	2205	1	0	0	0	0	1	copy fasta	FCRL3	chr1	157671481	157705769
FCRL4_chr1_157568747_157603085	1/1	c0001	1548	172	40	39	69	8	14	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0002	1548	171	30	20	96	4	21	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0003	1548	13	0	3	10	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0004	1548	10	2	6	0	2	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0005	1548	8	7	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0006	1548	6	0	0	6	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0007	1548	4	4	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0008	1548	4	0	0	4	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0009	1548	3	3	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0010	1548	2	0	1	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0011	1548	1	0	0	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0012	1548	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0013	1548	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0014	1548	1	0	1	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0015	1548	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0016	1548	1	0	0	1	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0017	1548	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0018	1548	1	1	0	0	0	0	copy fasta	FCRL4	chr1	157568747	157603085
FCRL4_chr1_157568747_157603085	0/0	c0019	1548	1	0	0	0	0	1	copy fasta	FCRL4	chr1	157568747	157603085
FCRL5_chr1_157508377_157557515	0/1	c0001	2934	131	8	25	74	8	15	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0002	2934	47	19	10	14	0	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0003	2934	44	2	1	40	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	1/0	c0004	2934	35	10	16	0	4	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0005	2934	31	7	0	20	0	4	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0006	2934	12	2	3	1	0	6	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0007	2934	8	0	5	0	2	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0008	2934	8	8	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0009	2934	6	6	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515