JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCRL5_chr1_157508377_157557515	0/0	c0010	2934	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0011	2934	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0012	2934	5	5	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0013	2934	3	0	0	3	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0014	2934	3	2	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0015	2934	3	3	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0016	2934	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0017	2934	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0018	2934	2	2	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0019	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0020	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0021	2934	1	0	0	0	0	1	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0022	2934	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0023	2934	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0024	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0025	2934	1	0	1	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0026	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0027	2934	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0028	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0029	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0030	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0031	2934	1	0	0	1	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL5_chr1_157508377_157557515	0/0	c0032	2934	1	1	0	0	0	0	copy fasta	FCRL5	chr1	157508377	157557515
FCRL6_chr1_159797360_159821257	1/0	c0001	1305	316	33	56	176	9	41	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0002	1305	71	22	12	32	1	4	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/1	c0003	1305	15	1	8	1	2	2	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0004	1305	15	14	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0005	1305	11	11	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0006	1305	5	3	1	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0007	1305	3	3	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0008	1305	3	3	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0009	1305	2	2	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0010	1305	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0011	1305	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0012	1305	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0013	1305	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0014	1305	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0015	1305	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0016	1305	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0017	1305	1	1	0	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0018	1305	1	0	1	0	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0019	1305	1	0	0	1	0	0	copy fasta	FCRL6	chr1	159797360	159821257
FCRL6_chr1_159797360_159821257	0/0	c0020	1305	1	0	0	0	0	1	copy fasta	FCRL6	chr1	159797360	159821257
FCRLA_chr1_161702229_161719352	0/0	c0001	1080	217	63	28	111	2	13	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/1	c0002	1080	140	13	35	57	10	24	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	1/0	c0003	1080	57	5	12	25	4	10	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0004	1080	15	0	0	15	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0005	1080	13	0	1	12	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0006	1080	8	7	1	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0007	1080	7	6	1	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352