JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCRLA_chr1_161702229_161719352	0/0	c0008	1080	4	0	4	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0009	1080	3	3	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0010	1080	2	0	0	2	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0011	1080	2	0	0	2	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0012	1080	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0013	1080	1	0	0	0	0	1	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0014	1080	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLA_chr1_161702229_161719352	0/0	c0015	1080	1	1	0	0	0	0	copy fasta	FCRLA	chr1	161702229	161719352
FCRLB_chr1_161716544_161733143	0/1	c0001	1281	148	13	34	71	8	21	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0002	1281	102	18	23	56	2	3	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0003	1281	74	52	4	11	0	7	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0004	1281	64	7	2	53	1	1	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0005	1281	28	0	4	21	2	1	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	1/0	c0006	1281	17	0	5	0	2	9	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0007	1281	4	4	0	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0008	1281	4	1	0	0	1	2	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0009	1281	3	0	0	3	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0010	1281	2	0	2	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0011	1281	2	0	0	0	0	2	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0013	1281	1	0	1	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0014	1281	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0015	1281	1	0	1	0	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0016	1281	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0017	1281	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0018	1281	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCRLB_chr1_161716544_161733143	0/0	c0019	1281	1	0	0	1	0	0	copy fasta	FCRLB	chr1	161716544	161733143
FCSK_chr16_70449595_70485274	0/1	c0001	3255	151	29	25	77	5	14	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	1/0	c0002	3255	127	14	37	42	9	24	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0003	3255	13	12	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0004	3255	11	11	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0005	3255	10	0	0	10	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0006	3255	9	0	4	5	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0007	3255	7	7	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0008	3255	4	4	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0009	3255	4	0	4	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0010	3255	2	0	0	0	0	2	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0011	3255	2	2	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0012	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0013	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0014	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0015	3255	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0016	3255	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0017	3255	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0018	3255	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0019	3233	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0020	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0021	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0022	3255	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0023	3255	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274