JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FCSK_chr16_70449595_70485274	0/0	c0024	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0025	3255	1	1	0	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0026	3255	1	0	1	0	0	0	copy fasta	FCSK	chr16	70449595	70485274
FCSK_chr16_70449595_70485274	0/0	c0027	3255	1	0	0	1	0	0	copy fasta	FCSK	chr16	70449595	70485274
FDCSP_chr4_70221124_70240252	1/1	c0001	258	445	95	74	216	14	44	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	c0002	258	2	0	0	2	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	c0003	258	2	0	2	0	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDCSP_chr4_70221124_70240252	0/0	c0004	258	1	1	0	0	0	0	copy fasta	FDCSP	chr4	70221124	70240252
FDFT1_chr8_11797741_11844298	0/0	c0001	1254	166	34	39	55	9	29	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0002	1254	112	6	15	77	1	13	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0003	1254	67	4	2	60	1	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/1	c0004	1254	42	27	11	0	2	1	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0005	1254	12	5	3	0	2	2	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0006	1254	11	2	2	6	0	1	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0007	1254	6	0	5	0	1	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0008	1254	5	5	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0009	1254	5	0	0	1	0	4	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	1/0	c0010	1254	5	4	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0011	1254	4	4	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0012	1254	4	0	0	4	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0013	1254	2	2	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0014	1254	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0015	1254	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0016	1254	1	0	1	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0017	1254	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0018	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0019	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0020	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0021	1254	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0022	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0023	1254	1	1	0	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0024	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0025	1254	1	0	1	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0026	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0027	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0028	1254	1	0	1	0	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0029	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDFT1_chr8_11797741_11844298	0/0	c0030	1254	1	0	0	1	0	0	copy fasta	FDFT1	chr8	11797741	11844298
FDPS_chr1_155303866_155325665	1/1	c0001	1260	337	94	56	132	13	40	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0002	1260	2	0	0	0	1	1	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0003	1260	2	2	0	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0004	1260	1	0	0	0	0	1	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0005	1260	1	0	1	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0006	1260	1	0	0	1	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDPS_chr1_155303866_155325665	0/0	c0008	1260	1	0	1	0	0	0	copy fasta	FDPS	chr1	155303866	155325665
FDX1_chr11_110424948_110469884	1/1	c0001	555	359	87	69	149	12	40	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	c0002	555	35	0	0	33	0	2	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	c0003	555	4	0	1	3	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX1_chr11_110424948_110469884	0/0	c0004	555	1	1	0	0	0	0	copy fasta	FDX1	chr11	110424948	110469884