JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FDX1_chr11_110424948_110469884	0/0	c0005	555	1	0	0	1	0	0	copy fasta	FDX1	chr11	110424948	110469884
FDX2_chr19_10305045_10321015	1/1	c0001	552	228	35	40	113	9	29	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0002	552	184	45	44	74	8	13	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0003	552	12	10	2	0	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0004	552	11	0	0	9	0	2	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0005	552	3	0	0	3	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0006	552	3	3	0	0	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0007	552	1	0	0	0	1	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0008	552	1	1	0	0	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDX2_chr19_10305045_10321015	0/0	c0009	552	1	0	0	1	0	0	copy fasta	FDX2	chr19	10305045	10321015
FDXACB1_chr11_111869056_111884165	0/1	c0001	1875	259	59	34	129	3	33	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0002	1875	81	18	21	31	6	5	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	1/0	c0003	1875	21	3	12	4	1	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0004	1875	6	0	0	6	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0005	1875	6	6	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0006	1875	2	0	1	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0007	1875	2	0	2	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0008	1875	2	2	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0009	1875	2	0	2	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0010	1875	1	0	1	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0011	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0012	1875	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0013	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0014	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0015	1875	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0016	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0017	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0018	1875	1	0	0	1	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0019	1875	1	0	1	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXACB1_chr11_111869056_111884165	0/0	c0020	1875	1	1	0	0	0	0	copy fasta	FDXACB1	chr11	111869056	111884165
FDXR_chr17_74857497_74877994	0/1	c0001	1476	243	78	57	64	13	30	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	1/0	c0002	1476	92	2	12	59	5	13	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0003	1476	36	0	1	32	0	3	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0004	1476	19	6	0	11	0	2	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0005	1476	4	4	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0006	1476	3	0	0	3	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0007	1476	2	2	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0008	1476	2	2	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0009	1476	2	0	0	2	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0012	1476	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0013	1476	1	0	0	0	0	1	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0014	1476	1	0	0	0	0	1	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0015	1476	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0016	1476	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0017	1476	1	1	0	0	0	0	copy fasta	FDXR	chr17	74857497	74877994
FDXR_chr17_74857497_74877994	0/0	c0018	1476	1	0	0	1	0	0	copy fasta	FDXR	chr17	74857497	74877994
FECH_chr18_57539377_57591702	0/1	c0001	1272	284	78	52	111	9	33	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	1/0	c0002	1272	97	2	15	65	6	8	copy fasta	FECH	chr18	57539377	57591702