JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FECH_chr18_57539377_57591702	0/0	c0003	1272	14	5	6	0	1	2	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0004	1272	6	0	0	6	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0005	1272	6	0	2	1	2	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0006	1272	6	6	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0007	1272	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0008	1272	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0009	1272	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0010	1272	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0011	1272	1	0	0	1	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0012	1272	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0013	1272	1	0	0	0	0	1	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0014	1272	1	0	1	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FECH_chr18_57539377_57591702	0/0	c0015	1272	1	1	0	0	0	0	copy fasta	FECH	chr18	57539377	57591702
FEM1A_chr19_4786734_4806273	1/1	c0001	2010	377	84	81	151	18	41	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0002	2010	33	0	2	25	0	6	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0003	2010	5	5	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0004	2010	5	5	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0005	2010	4	3	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0006	2010	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0007	2010	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0008	2010	1	0	0	0	0	1	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0009	2010	1	0	1	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1A_chr19_4786734_4806273	0/0	c0011	2010	1	1	0	0	0	0	copy fasta	FEM1A	chr19	4786734	4806273
FEM1B_chr15_68272745_68300862	0/1	c0001	1884	270	59	63	93	16	38	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0002	1884	21	19	1	0	0	1	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0003	1884	5	5	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0004	1884	5	5	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0005	1884	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0006	1884	2	2	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0007	1884	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0008	1884	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0009	1884	1	0	0	0	0	1	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0010	1884	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0011	1884	1	0	0	1	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	1/0	c0012	1884	1	0	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1B_chr15_68272745_68300862	0/0	c0013	1884	1	1	0	0	0	0	copy fasta	FEM1B	chr15	68272745	68300862
FEM1C_chr5_115515908_115549775	1/1	c0001	1854	338	74	61	150	16	35	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0002	1854	60	13	5	33	2	7	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0003	1854	2	0	0	2	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0004	1854	2	0	0	2	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0005	1854	1	1	0	0	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0006	1854	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0007	1854	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEM1C_chr5_115515908_115549775	0/0	c0008	1854	1	0	0	1	0	0	copy fasta	FEM1C	chr5	115515908	115549775
FEN1_chr11_61787911_61802238	1/1	c0001	1143	333	86	64	131	18	32	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	c0002	1143	1	0	0	1	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	c0003	1143	1	0	0	1	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	c0004	1143	1	1	0	0	0	0	copy fasta	FEN1	chr11	61787911	61802238
FEN1_chr11_61787911_61802238	0/0	c0005	1143	1	1	0	0	0	0	copy fasta	FEN1	chr11	61787911	61802238