JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FEN1_chr11_61787911_61802238	0/0	c0006	1143	1	0	0	1	0	0	copy fasta	FEN1	chr11	61787911	61802238
FER1L5_chr2_96637764_96709883	1/1	c0001	6174	61	6	14	24	6	9	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0002	6174	61	16	17	20	5	3	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0003	6174	36	35	1	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0004	6174	25	9	4	10	0	2	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0005	6174	10	9	1	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0006	6174	6	0	0	5	0	1	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0007	6174	3	3	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0008	6174	2	0	2	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0009	6174	2	2	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0010	6174	2	0	0	2	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0011	6174	2	0	1	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0012	6174	2	2	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0013	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0014	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0015	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0016	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0017	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0018	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0019	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0020	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0021	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0022	6174	1	1	0	0	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0023	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0024	6174	1	0	0	0	0	1	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0025	6163	1	0	0	0	1	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L5_chr2_96637764_96709883	0/0	c0026	6174	1	0	0	1	0	0	copy fasta	FER1L5	chr2	96637764	96709883
FER1L6_chr8_123846987_124125061	0/1	c0001	5574	34	10	4	18	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0002	5574	15	1	9	3	0	2	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0003	5574	14	3	1	9	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0004	5574	12	4	1	5	1	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0005	5574	9	4	2	3	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0006	5574	9	1	4	2	0	2	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	1/0	c0007	5574	7	0	2	3	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0008	5574	6	6	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0009	5574	6	0	1	3	2	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0010	5574	4	0	2	1	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0011	5574	4	0	1	3	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0012	5574	4	4	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0013	5574	3	0	1	0	1	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0014	5574	3	1	2	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0015	5574	3	1	1	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0016	5574	3	0	2	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0017	5574	3	2	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0018	5574	3	2	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0019	5574	3	2	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0020	5574	3	2	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0021	5574	2	0	2	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0022	5574	2	0	1	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0023	5574	2	0	0	2	0	0	copy fasta	FER1L6	chr8	123846987	124125061