JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FER1L6_chr8_123846987_124125061	0/0	c0024	5574	2	0	0	2	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0025	5574	2	2	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0026	5574	2	2	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0027	5574	2	1	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0028	5574	2	2	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0029	5574	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0030	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0031	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0032	5574	1	0	0	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0033	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0034	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0035	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0036	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0037	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0038	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0039	5574	1	0	0	0	0	1	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0040	5574	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0041	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0042	5574	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0043	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0044	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0045	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0046	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0047	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0048	5574	1	0	0	0	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0049	5574	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0050	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0051	5574	1	0	0	0	1	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0052	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0053	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0054	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0055	5574	1	0	1	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0056	5574	1	0	0	1	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0057	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0058	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0059	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FER1L6_chr8_123846987_124125061	0/0	c0060	5574	1	1	0	0	0	0	copy fasta	FER1L6	chr8	123846987	124125061
FERD3L_chr7_19139782_19150421	1/1	c0001	501	343	87	67	139	11	37	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0002	504	75	1	13	47	3	11	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0003	501	44	0	2	42	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0004	501	5	5	0	0	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0005	504	1	0	0	1	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0006	501	1	1	0	0	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERD3L_chr7_19139782_19150421	0/0	c0007	501	1	0	0	1	0	0	copy fasta	FERD3L	chr7	19139782	19150421
FERMT1_chr20_6069845_6128030	0/0	c0001	2034	88	15	13	38	3	19	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0002	2034	86	5	7	66	2	6	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	1/1	c0003	2034	67	25	13	20	0	7	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0004	2034	24	0	2	19	2	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0005	2034	19	1	3	13	0	2	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0006	2034	11	8	0	1	0	2	copy fasta	FERMT1	chr20	6069845	6128030