JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FERMT1_chr20_6069845_6128030	0/0	c0007	2034	11	10	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0008	2034	9	0	7	0	2	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0009	2034	7	0	6	0	0	1	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0010	2034	7	7	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0011	2034	6	5	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0012	2034	5	4	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0013	2034	3	0	3	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0014	2034	2	0	2	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0015	2034	2	1	0	0	1	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0016	2034	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0017	2034	2	2	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0018	2034	2	0	0	2	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0019	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0020	2034	1	0	0	0	1	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0021	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0022	2034	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0023	2034	1	0	0	0	1	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0024	2034	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0025	2034	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0026	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0027	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0028	2034	1	0	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0029	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0030	2034	1	0	0	1	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0031	2034	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0032	2034	1	0	1	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT1_chr20_6069845_6128030	0/0	c0033	2034	1	1	0	0	0	0	copy fasta	FERMT1	chr20	6069845	6128030
FERMT2_chr14_52852273_52956050	0/1	c0001	2043	163	28	41	59	12	22	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	1/0	c0002	2043	94	34	9	47	0	3	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0003	2043	10	5	0	5	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0004	2043	7	0	5	2	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0005	2043	2	2	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0006	2043	2	0	0	2	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0007	2043	2	1	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0008	2043	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0009	2043	1	0	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0010	2043	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0011	2043	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0012	2043	1	0	0	0	0	1	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0013	2043	1	0	0	1	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0014	2043	1	0	1	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT2_chr14_52852273_52956050	0/0	c0015	2043	1	1	0	0	0	0	copy fasta	FERMT2	chr14	52852273	52956050
FERMT3_chr11_64201721_64228891	1/1	c0001	1992	185	59	23	63	9	29	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0002	1992	88	11	10	63	2	2	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0003	1992	56	8	25	20	1	2	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0004	1992	24	1	6	11	0	6	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0005	1992	3	3	0	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0006	1992	2	0	0	0	0	2	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0007	1992	2	2	0	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0008	1992	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891