JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FERMT3_chr11_64201721_64228891	0/0	c0009	1992	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0010	1992	1	0	0	0	0	1	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0011	1992	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0012	1992	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0013	1992	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0014	1992	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0015	1992	1	0	0	1	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0016	1992	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FERMT3_chr11_64201721_64228891	0/0	c0017	1992	1	0	1	0	0	0	copy fasta	FERMT3	chr11	64201721	64228891
FER_chr5_108742897_109201841	1/1	c0001	2469	62	30	6	16	1	7	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0002	2469	19	10	3	5	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0003	2469	16	0	1	12	1	2	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0004	2469	6	6	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0005	2469	6	1	2	0	1	2	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0006	2469	6	3	2	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0007	2469	6	2	2	0	0	2	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0008	2469	3	3	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0009	2469	3	3	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0010	2469	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0011	2469	2	0	0	0	1	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0012	2469	2	2	0	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0013	2469	2	0	2	0	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0014	2469	1	0	0	1	0	0	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0015	2469	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FER_chr5_108742897_109201841	0/0	c0016	2469	1	0	0	0	0	1	copy fasta	FER	chr5	108742897	109201841
FES_chr15_90879504_90900776	0/0	c0001	2469	219	10	47	131	4	27	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/1	c0002	2469	125	57	20	20	11	16	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	1/0	c0003	2469	20	3	0	13	1	2	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0004	2469	19	18	1	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0005	2469	4	0	0	4	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0006	2469	3	3	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0007	2469	3	3	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0008	2469	3	0	0	3	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0009	2469	3	0	2	0	1	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0010	2469	2	0	0	0	0	2	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0011	2469	2	2	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0012	2469	2	2	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0013	2469	1	1	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0014	2469	1	0	0	0	1	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0015	2469	1	0	1	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0016	2469	1	1	0	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0017	2469	1	0	0	0	0	1	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0018	2469	1	0	1	0	0	0	copy fasta	FES	chr15	90879504	90900776
FES_chr15_90879504_90900776	0/0	c0019	2469	1	0	0	1	0	0	copy fasta	FES	chr15	90879504	90900776
FETUB_chr3_186635399_186658141	0/0	c0001	1149	196	25	28	114	7	22	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	1/0	c0002	1149	132	18	32	58	6	17	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0003	1149	38	5	6	20	3	4	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0004	1149	22	8	4	8	0	2	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0005	1149	9	1	2	5	0	1	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0006	1149	8	6	2	0	0	0	copy fasta	FETUB	chr3	186635399	186658141