JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FETUB_chr3_186635399_186658141	0/0	c0007	1149	7	5	2	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0008	1149	7	7	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0009	1149	7	7	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0010	1149	6	0	1	5	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0011	1149	5	0	2	3	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0012	1149	4	4	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0013	1149	4	4	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0014	1149	2	0	0	0	2	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0015	1149	2	2	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0016	1149	2	2	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0017	1149	1	0	0	0	0	1	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0018	1149	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0019	1149	1	1	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0020	1149	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0021	1149	1	0	0	0	0	1	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0022	1149	1	1	0	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0023	1149	1	0	1	0	0	0	copy fasta	FETUB	chr3	186635399	186658141
FETUB_chr3_186635399_186658141	0/0	c0024	1149	1	0	0	1	0	0	copy fasta	FETUB	chr3	186635399	186658141
FEV_chr2_218976087_218990184	1/1	c0001	717	308	68	63	137	8	30	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	c0002	717	53	19	3	25	0	6	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	c0003	717	2	0	0	0	0	2	copy fasta	FEV	chr2	218976087	218990184
FEV_chr2_218976087_218990184	0/0	c0004	717	1	1	0	0	0	0	copy fasta	FEV	chr2	218976087	218990184
FEZ1_chr11_125437881_125501265	1/1	c0001	1179	307	72	52	140	14	27	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0002	1179	42	14	10	15	2	1	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0003	1179	2	0	2	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0004	1179	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0005	1179	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0006	1179	1	1	0	0	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0007	1179	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ1_chr11_125437881_125501265	0/0	c0008	1206	1	0	0	1	0	0	copy fasta	FEZ1	chr11	125437881	125501265
FEZ2_chr2_36547258_36603168	0/0	c0001	1062	147	26	16	82	5	18	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0002	1062	92	27	17	46	1	1	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0003	1062	91	17	24	29	4	17	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0004	1062	28	8	2	15	2	1	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	1/1	c0005	1062	23	4	5	5	2	5	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0006	1062	4	4	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0007	1062	3	0	1	1	1	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0008	1062	3	3	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0009	1062	3	1	2	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0010	1062	2	0	1	0	1	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0011	1062	2	1	1	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0012	1062	1	1	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0013	1062	1	0	0	1	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0014	1062	1	0	0	1	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0015	1062	1	1	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0016	1062	1	1	0	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZ2_chr2_36547258_36603168	0/0	c0017	1062	1	0	1	0	0	0	copy fasta	FEZ2	chr2	36547258	36603168
FEZF1_chr7_122296303_122309750	1/1	c0001	1428	427	97	76	194	18	40	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0002	1428	1	0	1	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0003	1428	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750