JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FEZF1_chr7_122296303_122309750	0/0	c0004	1428	1	0	0	0	0	1	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0005	1428	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0006	1428	1	0	1	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0007	1428	1	1	0	0	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0008	1428	1	0	0	0	0	1	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF1_chr7_122296303_122309750	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	FEZF1	chr7	122296303	122309750
FEZF2_chr3_62364681_62378550	1/1	c0001	1380	380	79	61	185	17	36	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0002	1381	23	2	3	11	0	7	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0003	1380	5	3	1	0	1	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0004	1389	4	4	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0005	1381	2	2	0	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0006	1366	1	0	0	0	0	1	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0007	1380	1	0	1	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0008	1380	1	0	0	1	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0010	1380	1	0	1	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FEZF2_chr3_62364681_62378550	0/0	c0011	1380	1	0	1	0	0	0	copy fasta	FEZF2	chr3	62364681	62378550
FFAR1_chr19_35342902_35358864	0/1	c0001	903	390	91	72	164	17	45	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	1/0	c0002	903	56	1	10	43	1	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0003	903	6	6	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0004	903	3	0	0	2	0	1	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0005	903	1	0	0	1	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0006	903	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0007	903	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0008	903	1	0	1	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR1_chr19_35342902_35358864	0/0	c0009	903	1	1	0	0	0	0	copy fasta	FFAR1	chr19	35342902	35358864
FFAR2_chr19_35443257_35456767	1/1	c0001	993	411	87	72	198	16	36	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0002	993	12	2	3	5	0	2	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0003	993	10	1	2	0	0	7	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0004	993	8	0	5	0	0	3	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0005	993	4	4	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0006	993	2	2	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0007	993	2	1	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0008	993	2	0	0	0	2	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0009	993	1	1	0	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0010	993	1	0	1	0	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR2_chr19_35443257_35456767	0/0	c0011	993	1	0	0	1	0	0	copy fasta	FFAR2	chr19	35443257	35456767
FFAR3_chr19_35353460_35365489	1/0	c0001	1041	107	47	11	45	3	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0002	1041	92	10	13	52	4	13	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0003	1041	60	1	16	36	1	6	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0004	1041	36	1	21	0	7	7	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0005	1041	34	17	1	16	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0006	1041	29	15	2	4	0	8	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0007	1041	20	0	2	14	1	3	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0008	1041	16	1	9	3	2	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0009	1041	5	0	1	0	0	4	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0010	1041	2	0	2	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0011	1108	2	2	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0012	1041	2	2	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489