JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FFAR3_chr19_35353460_35365489	0/0	c0013	133	1	0	0	0	0	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0014	1041	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0015	1041	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0016	1041	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0017	1041	1	0	0	0	0	1	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0018	13494	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0019	1041	1	1	0	0	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0020	1041	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0021	1041	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR3_chr19_35353460_35365489	0/0	c0022	1041	1	0	0	1	0	0	copy fasta	FFAR3	chr19	35353460	35365489
FFAR4_chr10_93561665_93595072	1/1	c0001	1086	300	91	53	108	11	35	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0002	1086	84	2	19	53	2	8	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0003	1086	4	0	2	0	1	1	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0004	1086	2	0	0	2	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0005	1086	1	1	0	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0006	1086	1	0	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FFAR4_chr10_93561665_93595072	0/0	c0008	1086	1	0	1	0	0	0	copy fasta	FFAR4	chr10	93561665	93595072
FGA_chr4_154580275_154595742	1/0	c0001	1935	247	47	55	96	13	35	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/1	c0002	1935	151	45	17	68	5	15	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0003	1935	21	0	0	21	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0004	1935	2	0	0	2	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0005	1935	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0006	1935	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0007	1935	1	1	0	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0008	1935	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0009	1935	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0010	1935	1	0	0	1	0	0	copy fasta	FGA	chr4	154580275	154595742
FGA_chr4_154580275_154595742	0/0	c0011	1935	1	1	0	0	0	0	copy fasta	FGA	chr4	154580275	154595742
FGB_chr4_154558011_154577807	1/1	c0001	1476	349	78	59	164	11	35	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0002	1476	63	1	16	36	4	6	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0003	1476	9	9	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0004	1476	4	0	0	4	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0005	1476	4	3	1	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0006	1476	3	3	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0007	1476	2	0	0	0	0	2	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0008	1476	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0009	1476	1	0	0	0	0	1	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0010	1476	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0012	1476	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0013	1476	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0014	1476	1	0	0	1	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0015	1476	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0016	1476	1	1	0	0	0	0	copy fasta	FGB	chr4	154558011	154577807
FGB_chr4_154558011_154577807	0/0	c0017	1476	1	0	0	0	1	0	copy fasta	FGB	chr4	154558011	154577807
FGD1_chrX_54440454_54501234	1/1	c0001	2886	176	26	38	78	11	21	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0002	2886	61	36	6	17	0	2	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0003	2886	17	0	0	17	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0004	2886	6	6	0	0	0	0	copy fasta	FGD1	chrX	54440454	54501234