JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGD1_chrX_54440454_54501234	0/0	c0005	2884	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0006	2886	1	0	0	0	0	1	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0007	2889	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD1_chrX_54440454_54501234	0/0	c0008	2887	1	0	0	1	0	0	copy fasta	FGD1	chrX	54440454	54501234
FGD2_chr6_37000655_37034069	0/0	c0001	1968	111	31	18	51	1	10	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	1/0	c0002	1968	77	18	13	23	7	15	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0003	1968	61	4	8	46	2	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0004	1968	41	11	5	14	4	7	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0005	1968	26	4	7	15	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0006	1968	26	8	0	18	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0007	1968	24	0	11	3	1	9	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/1	c0008	1968	13	4	3	3	1	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0009	1968	9	0	0	9	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0010	1968	4	3	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0011	1968	4	0	1	3	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0012	1968	4	4	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0013	1968	3	3	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0014	1968	3	0	0	3	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0015	1968	2	0	2	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0016	1968	2	0	0	2	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0017	1968	2	0	0	2	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0018	1968	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0019	1968	2	2	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0020	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0021	1968	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0022	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0023	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0024	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0025	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0026	1968	1	1	0	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0027	1968	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0028	1968	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0029	1968	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0030	1968	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0031	1968	1	0	0	0	0	1	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0032	1968	1	0	0	1	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD2_chr6_37000655_37034069	0/0	c0033	1968	1	0	1	0	0	0	copy fasta	FGD2	chr6	37000655	37034069
FGD3_chr9_92942523_93041233	0/1	c0001	2178	124	21	17	57	6	22	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0002	2178	94	21	21	41	1	10	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0003	2178	28	0	12	16	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0004	2178	28	11	8	6	3	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0005	2178	13	9	2	2	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0006	2178	3	3	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0007	2178	3	0	0	3	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0008	2178	3	3	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0009	2178	2	0	0	0	0	2	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0010	2178	2	2	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0011	2178	2	0	0	2	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0012	2178	1	0	0	0	0	1	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233