JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGD3_chr9_92942523_93041233	0/0	c0014	2178	1	0	0	0	0	1	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0015	2178	1	0	0	0	1	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0016	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0017	2178	1	0	0	0	1	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0018	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0019	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0020	2178	1	0	1	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0021	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0022	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0023	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0024	2178	1	0	1	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0025	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0026	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0027	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0028	2178	1	0	0	1	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	1/0	c0029	2178	1	0	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0030	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD3_chr9_92942523_93041233	0/0	c0031	2178	1	1	0	0	0	0	copy fasta	FGD3	chr9	92942523	93041233
FGD4_chr12_32394558_32651050	0/0	c0001	2712	46	12	6	19	1	8	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	1/0	c0002	2712	45	6	12	16	2	8	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0003	2712	31	16	10	3	0	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0004	2712	26	6	4	11	0	5	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0005	2712	23	8	8	6	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/1	c0006	2712	14	4	7	0	1	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0007	2712	13	0	5	4	2	2	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0008	2712	9	9	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0009	2712	4	0	1	3	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0010	2712	3	3	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0011	2712	2	0	0	1	0	1	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0012	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0013	2712	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0014	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0015	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0016	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0017	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0018	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0019	2712	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0020	2712	1	0	0	1	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0021	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0022	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0023	2712	1	0	1	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0024	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0025	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0026	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD4_chr12_32394558_32651050	0/0	c0027	2712	1	1	0	0	0	0	copy fasta	FGD4	chr12	32394558	32651050
FGD5_chr3_14813962_14939571	0/0	c0001	4389	178	26	45	78	13	16	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	1/1	c0002	4389	54	6	12	24	3	7	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0003	4389	43	0	3	37	0	3	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0004	4389	8	8	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0005	4389	7	6	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571