JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGD5_chr3_14813962_14939571	0/0	c0006	4389	7	1	2	1	0	3	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0007	4389	4	0	0	4	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0008	4389	3	3	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0009	4389	2	2	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0010	4389	2	0	1	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0011	4389	2	2	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0012	4389	2	0	0	2	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0013	4389	2	0	0	0	0	2	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0014	4389	2	2	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0015	4407	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0016	4389	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0017	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0018	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0019	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0020	4389	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0021	4389	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0022	4389	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0023	4389	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0024	4389	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0025	4389	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0026	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0027	4389	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0028	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0029	4389	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0030	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0031	4389	1	0	0	0	0	1	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0032	4389	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0033	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0034	4389	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0035	4389	1	0	1	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0036	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0037	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0038	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0039	4389	1	0	0	1	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD5_chr3_14813962_14939571	0/0	c0040	4389	1	1	0	0	0	0	copy fasta	FGD5	chr3	14813962	14939571
FGD6_chr12_95071749_95222467	1/0	c0001	4293	187	38	47	63	11	27	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0002	4293	43	1	10	25	1	6	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/1	c0003	4293	39	6	4	25	0	3	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0004	4293	29	0	0	29	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0005	4293	15	6	1	8	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0006	4293	14	2	6	2	0	4	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0007	4293	12	6	3	0	2	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0008	4293	5	0	0	5	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0009	4293	4	2	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0010	4293	3	0	0	2	1	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0011	4293	3	3	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0012	4293	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0013	4293	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0014	4293	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0015	4293	2	0	2	0	0	0	copy fasta	FGD6	chr12	95071749	95222467