JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGD6_chr12_95071749_95222467	0/0	c0016	4293	2	2	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0017	4293	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0018	4293	2	0	0	2	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0019	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0020	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0021	4293	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0022	4293	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0023	4293	1	0	1	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0024	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0025	4293	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0026	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0027	4293	1	0	0	0	1	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0028	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0029	4293	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0030	4293	1	0	0	0	0	1	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0031	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0032	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0033	4293	1	0	0	1	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGD6_chr12_95071749_95222467	0/0	c0034	4293	1	1	0	0	0	0	copy fasta	FGD6	chr12	95071749	95222467
FGF10_chr5_44295247_44394420	1/1	c0001	627	342	80	60	158	14	28	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	c0002	627	6	5	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	c0003	627	1	1	0	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF10_chr5_44295247_44394420	0/0	c0004	627	1	0	1	0	0	0	copy fasta	FGF10	chr5	44295247	44394420
FGF11_chr17_7434512_7449937	1/1	c0001	678	343	86	66	146	14	29	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0002	678	2	2	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0003	678	1	0	0	0	0	1	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0004	678	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0005	658	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0006	678	1	1	0	0	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF11_chr17_7434512_7449937	0/0	c0007	678	1	0	0	1	0	0	copy fasta	FGF11	chr17	7434512	7449937
FGF12_chr3_192134390_192732541	0/0	c0001	546	90	58	14	12	0	6	copy fasta	FGF12	chr3	192134390	192732541
FGF13_chrX_138609727_138716717	1/1	c0001	738	239	54	49	99	11	24	copy fasta	FGF13	chrX	138609727	138716717
FGF13_chrX_138609727_138716717	0/0	c0002	737	1	0	0	1	0	0	copy fasta	FGF13	chrX	138609727	138716717
FGF14_chr13_101705804_101921945	1/1	c0001	744	261	84	49	82	10	34	copy fasta	FGF14	chr13	101705804	101921945
FGF14_chr13_101705804_101921945	0/0	c0002	744	5	4	1	0	0	0	copy fasta	FGF14	chr13	101705804	101921945
FGF16_chrX_77442389_77462278	0/1	c0001	624	304	74	46	140	13	30	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	c0002	624	2	0	2	0	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	c0003	623	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	1/0	c0004	624	1	0	0	0	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF16_chrX_77442389_77462278	0/0	c0005	624	1	0	0	1	0	0	copy fasta	FGF16	chrX	77442389	77462278
FGF17_chr8_22037820_22053809	1/1	c0001	651	442	97	76	207	14	46	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0002	651	7	0	3	0	4	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0003	651	1	0	1	0	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0004	651	1	0	0	1	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0005	634	1	0	0	1	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0006	651	1	1	0	0	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF17_chr8_22037820_22053809	0/0	c0007	651	1	0	0	1	0	0	copy fasta	FGF17	chr8	22037820	22053809
FGF18_chr5_171414647_171462626	1/1	c0001	624	355	90	69	141	15	38	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	c0002	624	29	0	5	18	3	3	copy fasta	FGF18	chr5	171414647	171462626
FGF18_chr5_171414647_171462626	0/0	c0003	624	3	0	0	3	0	0	copy fasta	FGF18	chr5	171414647	171462626