JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGF18_chr5_171414647_171462626	0/0	c0004	624	1	0	0	0	0	1	copy fasta	FGF18	chr5	171414647	171462626
FGF19_chr11_69693238_69709022	1/1	c0001	651	439	97	82	196	16	46	copy fasta	FGF19	chr11	69693238	69709022
FGF19_chr11_69693238_69709022	0/0	c0002	651	1	1	0	0	0	0	copy fasta	FGF19	chr11	69693238	69709022
FGF1_chr5_142587178_142691090	1/1	c0001	468	340	92	64	140	12	30	copy fasta	FGF1	chr5	142587178	142691090
FGF20_chr8_16987181_17007345	0/1	c0001	636	392	72	69	200	13	37	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0002	636	27	4	10	0	3	10	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0003	636	12	12	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	1/0	c0004	636	8	1	3	0	2	1	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0005	636	7	0	0	7	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0006	636	3	2	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0007	636	2	2	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0008	636	2	0	0	2	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0009	636	1	1	0	0	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0010	636	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF20_chr8_16987181_17007345	0/0	c0011	636	1	0	0	1	0	0	copy fasta	FGF20	chr8	16987181	17007345
FGF21_chr19_48750524_48763330	0/1	c0001	630	350	50	50	202	9	38	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0002	630	35	23	9	0	0	3	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	1/0	c0003	630	26	4	8	0	5	8	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0004	630	17	1	12	2	2	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0005	630	14	14	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0006	630	5	0	4	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0007	630	3	3	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0008	630	2	0	1	0	0	1	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0009	630	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0010	630	1	1	0	0	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0011	630	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF21_chr19_48750524_48763330	0/0	c0012	630	1	0	0	1	0	0	copy fasta	FGF21	chr19	48750524	48763330
FGF22_chr19_634879_649373	1/1	c0001	513	389	87	79	164	16	41	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0002	514	29	3	4	18	0	4	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0003	513	9	9	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0004	513	2	0	0	2	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0005	513	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0006	513	1	1	0	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0007	513	1	0	1	0	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0008	513	1	0	0	1	0	0	copy fasta	FGF22	chr19	634879	649373
FGF22_chr19_634879_649373	0/0	c0009	513	1	0	0	0	0	1	copy fasta	FGF22	chr19	634879	649373
FGF23_chr12_4363227_4384712	1/1	c0001	756	361	81	56	167	13	42	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0002	756	60	11	15	30	2	2	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0003	756	2	2	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0004	756	1	0	1	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0005	756	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0006	756	1	0	0	0	1	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0007	756	1	1	0	0	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF23_chr12_4363227_4384712	0/0	c0008	756	1	0	0	1	0	0	copy fasta	FGF23	chr12	4363227	4384712
FGF2_chr4_122821831_122903236	1/1	c0001	468	255	89	58	60	10	36	copy fasta	FGF2	chr4	122821831	122903236
FGF2_chr4_122821831_122903236	0/0	c0002	468	1	1	0	0	0	0	copy fasta	FGF2	chr4	122821831	122903236
FGF3_chr11_69804968_69824416	1/1	c0001	720	389	83	75	176	14	39	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0002	720	20	4	4	7	2	3	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0003	720	6	5	1	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0004	720	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416