JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGF3_chr11_69804968_69824416	0/0	c0005	733	1	0	0	0	0	1	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0006	720	1	0	0	1	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0007	720	1	0	0	1	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0008	720	1	1	0	0	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0009	720	1	0	0	1	0	0	copy fasta	FGF3	chr11	69804968	69824416
FGF3_chr11_69804968_69824416	0/0	c0010	720	1	0	0	0	0	1	copy fasta	FGF3	chr11	69804968	69824416
FGF4_chr11_69766022_69780341	1/1	c0001	621	421	91	72	198	14	44	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	c0002	621	8	0	4	0	2	2	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	c0003	621	3	3	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	c0004	621	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF4_chr11_69766022_69780341	0/0	c0005	621	1	1	0	0	0	0	copy fasta	FGF4	chr11	69766022	69780341
FGF5_chr4_80261664_80296017	1/1	c0001	807	426	74	70	219	16	45	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	c0002	807	22	19	3	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	c0003	810	5	0	4	0	0	1	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	c0004	807	1	0	0	1	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	c0005	807	1	1	0	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF5_chr4_80261664_80296017	0/0	c0006	807	1	0	1	0	0	0	copy fasta	FGF5	chr4	80261664	80296017
FGF6_chr12_4429142_4450815	0/0	c0001	627	220	25	55	116	8	16	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0002	627	133	17	13	84	3	16	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/1	c0003	627	32	11	5	3	5	7	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0004	627	12	11	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0005	627	11	2	0	9	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	1/0	c0006	627	9	8	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0007	627	5	5	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0008	627	4	4	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0009	627	4	4	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0010	627	3	2	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0011	627	3	1	0	0	0	2	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0012	627	3	0	2	1	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0013	627	1	0	0	1	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0014	627	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0015	627	1	0	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0016	627	1	0	0	0	0	1	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0017	627	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0018	627	1	0	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0019	627	1	0	0	1	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0020	627	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0021	627	1	0	0	1	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0022	627	1	1	0	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF6_chr12_4429142_4450815	0/0	c0023	627	1	0	1	0	0	0	copy fasta	FGF6	chr12	4429142	4450815
FGF7_chr15_49418242_49493775	1/1	c0001	585	358	86	54	152	14	50	copy fasta	FGF7	chr15	49418242	49493775
FGF8_chr10_101765109_101781114	1/1	c0001	735	352	88	68	149	14	31	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	c0002	735	4	0	0	4	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	c0003	735	2	2	0	0	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	c0004	735	1	0	0	0	0	1	copy fasta	FGF8	chr10	101765109	101781114
FGF8_chr10_101765109_101781114	0/0	c0005	735	1	0	0	1	0	0	copy fasta	FGF8	chr10	101765109	101781114
FGF9_chr13_21666073_21709498	0/1	c0001	627	295	52	54	147	10	31	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	1/0	c0002	627	64	34	15	3	4	7	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	c0003	627	2	2	0	0	0	0	copy fasta	FGF9	chr13	21666073	21709498
FGF9_chr13_21666073_21709498	0/0	c0004	627	1	0	1	0	0	0	copy fasta	FGF9	chr13	21666073	21709498