JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGFBP1_chr4_15930577_15943740	0/0	c0001	705	417	77	84	195	16	45	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	1/1	c0002	705	50	13	3	29	1	2	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0003	705	4	4	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0004	705	2	2	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0005	705	2	1	1	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0006	705	1	1	0	0	0	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0007	705	1	0	0	0	1	0	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP1_chr4_15930577_15943740	0/0	c0008	705	1	0	0	0	0	1	copy fasta	FGFBP1	chr4	15930577	15943740
FGFBP2_chr4_15955245_15968175	0/1	c0001	672	174	18	27	111	7	10	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0002	672	163	22	41	70	6	24	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0003	672	49	7	13	17	4	8	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0004	672	29	17	1	8	1	2	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	1/0	c0005	672	29	27	1	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0006	672	8	3	0	5	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0007	672	4	4	0	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0008	672	1	0	1	0	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP2_chr4_15955245_15968175	0/0	c0009	672	1	0	0	1	0	0	copy fasta	FGFBP2	chr4	15955245	15968175
FGFBP3_chr10_91901584_91914486	1/0	c0001	777	319	75	60	146	6	31	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/1	c0002	777	40	9	14	1	6	9	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0003	777	37	1	2	28	6	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0004	777	11	10	1	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0005	777	3	1	2	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0006	777	3	0	0	3	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0007	809	1	0	0	0	0	1	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0008	777	1	0	1	0	0	0	copy fasta	FGFBP3	chr10	91901584	91914486
FGFBP3_chr10_91901584_91914486	0/0	c0009	777	1	0	0	0	0	1	copy fasta	FGFBP3	chr10	91901584	91914486
FGFR1OP2_chr12_26933470_26971648	1/1	c0001	762	420	79	76	203	18	42	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	c0002	762	4	0	0	4	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	c0003	762	1	1	0	0	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1OP2_chr12_26933470_26971648	0/0	c0004	762	1	0	0	1	0	0	copy fasta	FGFR1OP2	chr12	26933470	26971648
FGFR1_chr8_38406143_38473635	1/1	c0001	2469	316	61	60	146	14	33	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0002	2469	4	3	1	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0003	2469	3	0	3	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0004	2469	3	0	0	3	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0005	2469	2	0	0	0	0	2	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0006	2469	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0007	2469	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0008	2469	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0009	2469	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0010	2469	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0011	2469	1	0	0	0	0	1	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0012	2469	1	1	0	0	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR1_chr8_38406143_38473635	0/0	c0013	2469	1	0	0	1	0	0	copy fasta	FGFR1	chr8	38406143	38473635
FGFR2_chr10_121473332_121603444	0/1	c0001	2466	140	27	31	63	4	14	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	1/0	c0002	2466	42	23	6	5	2	5	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0003	2466	39	25	6	8	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0004	2466	4	4	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0005	2466	4	2	1	0	0	1	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0006	2466	3	3	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0007	2466	2	0	0	2	0	0	copy fasta	FGFR2	chr10	121473332	121603444