Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGAP2_chr12_57720197_57743742	0/0	c0017	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0018	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0019	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0020	3579	1	0	0	0	0	1	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0021	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0022	3579	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0023	3579	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0024	3579	1	1	0	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0025	3579	1	0	1	0	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0026	3579	1	0	0	0	1	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP2_chr12_57720197_57743742	0/0	c0027	3579	1	0	0	1	0	0	copy fasta	AGAP2	chr12	57720197	57743742
AGAP3_chr7_151081475_151149434	0/1	c0001	2739	316	68	61	135	15	36	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0002	2739	8	8	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0003	2739	6	6	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0004	2739	4	4	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0005	2739	3	3	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0006	2739	2	0	2	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0007	2739	2	2	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	1/0	c0008	2736	1	0	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0009	2739	1	0	1	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0010	2739	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0011	2739	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0012	2739	1	1	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0013	2739	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0014	2739	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0015	2739	1	0	0	0	1	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0016	2739	1	0	0	1	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0017	2739	1	0	0	0	0	1	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0018	2739	1	1	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0019	2762	1	0	0	0	0	1	copy fasta	AGAP3	chr7	151081475	151149434
AGAP3_chr7_151081475_151149434	0/0	c0020	2739	1	1	0	0	0	0	copy fasta	AGAP3	chr7	151081475	151149434
AGAP4_chr10_45820594_45852500	0/0	c0001	2061	110	16	28	53	3	10	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0002	2061	100	4	6	71	1	18	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0003	2061	15	0	15	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0004	2061	15	0	4	6	0	5	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0005	2061	13	11	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0006	2061	13	11	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0007	2061	13	12	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/1	c0008	2061	9	0	1	2	1	4	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0009	2061	7	7	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0010	2061	6	0	3	0	3	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	1/0	c0011	2061	6	3	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0012	2061	6	0	0	6	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0013	2061	5	5	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0014	2061	5	0	0	5	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0015	2061	5	0	4	0	1	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0016	2061	3	0	0	3	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0017	2061	3	2	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0018	2061	3	0	2	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0019	2061	3	2	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500