JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGFR2_chr10_121473332_121603444	0/0	c0008	2466	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0009	2466	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0010	2466	1	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0011	2466	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0012	2466	1	1	0	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR2_chr10_121473332_121603444	0/0	c0013	2466	1	0	1	0	0	0	copy fasta	FGFR2	chr10	121473332	121603444
FGFR3_chr4_1788293_1813867	0/1	c0001	2421	269	52	62	113	8	33	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0002	2421	31	0	7	15	3	6	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0003	2421	10	9	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0004	2421	10	9	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0005	2421	7	0	0	7	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0006	2421	6	3	2	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0007	2421	5	0	0	5	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0008	2421	4	4	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0009	2421	4	0	3	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0010	2421	3	3	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0011	2421	3	3	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	1/0	c0012	2421	3	2	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0013	2421	3	0	0	3	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0014	2421	2	1	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0015	2421	2	0	0	0	0	2	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0016	2421	2	0	0	2	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0017	2421	1	1	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0018	2421	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0019	2421	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0020	2421	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0021	2421	1	0	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0022	2419	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0023	2421	1	0	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0024	2421	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0025	2421	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0026	2421	1	1	0	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0027	2421	1	0	1	0	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0028	2421	1	0	0	0	0	1	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0029	2421	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0030	2421	1	0	0	0	1	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0031	2421	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR3_chr4_1788293_1813867	0/0	c0032	2421	1	0	0	1	0	0	copy fasta	FGFR3	chr4	1788293	1813867
FGFR4_chr5_177081915_177103144	0/0	c0001	2409	107	11	22	55	5	14	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0002	2409	104	1	21	63	3	16	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	1/1	c0003	2409	37	24	7	0	2	2	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0004	2409	35	11	11	0	4	9	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0005	2409	27	17	5	3	0	2	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0006	2409	14	9	2	0	1	2	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0007	2409	9	7	2	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0008	2409	7	0	0	7	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0009	2409	7	5	1	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0010	2409	4	4	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0011	2409	2	0	2	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0012	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144