JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGFR4_chr5_177081915_177103144	0/0	c0013	2409	1	0	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0014	2409	1	0	0	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0015	2394	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0016	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0017	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0018	2424	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0019	2409	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0020	2409	1	0	0	0	1	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0021	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0022	2409	1	0	0	0	0	1	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0023	2391	1	0	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0024	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0025	2409	1	0	1	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0026	2409	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0027	2409	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0028	2409	1	0	0	1	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0029	2409	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFR4_chr5_177081915_177103144	0/0	c0030	2409	1	1	0	0	0	0	copy fasta	FGFR4	chr5	177081915	177103144
FGFRL1_chr4_1006626_1031898	1/1	c0001	1515	186	28	44	82	5	25	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0002	1515	123	46	27	34	8	8	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0003	1515	29	3	4	10	3	9	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0004	1515	19	0	1	18	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0005	1515	10	2	2	5	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0006	1515	4	4	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0007	1515	3	3	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0008	1515	3	0	0	3	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0009	1515	3	2	1	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0010	1515	3	3	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0011	1515	3	3	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0012	1515	3	0	0	3	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0013	1515	2	2	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0014	1515	2	0	0	2	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0015	1515	2	0	1	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0016	1515	2	0	2	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0017	1515	2	0	0	1	0	1	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0020	1515	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0021	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0022	1515	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0023	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0024	1515	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0025	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0026	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0027	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0028	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0029	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0030	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0031	1515	1	1	0	0	0	0	copy fasta	FGFRL1	chr4	1006626	1031898
FGFRL1_chr4_1006626_1031898	0/0	c0032	1515	1	0	0	1	0	0	copy fasta	FGFRL1	chr4	1006626	1031898