JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGGY_chr1_59292094_59767730	0/0	c0001	1656	68	26	11	20	3	8	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	1/1	c0002	1656	43	6	10	12	3	10	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0003	1656	19	6	1	9	0	3	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0004	1656	15	10	3	1	0	1	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0005	1656	5	5	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0006	1656	2	2	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0007	1656	2	1	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0008	1656	2	1	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0009	1656	2	0	2	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0010	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0011	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0012	1656	1	0	1	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0013	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0014	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0015	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0016	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGGY_chr1_59292094_59767730	0/0	c0017	1656	1	1	0	0	0	0	copy fasta	FGGY	chr1	59292094	59767730
FGG_chr4_154599171_154617656	1/1	c0001	1362	410	83	62	197	18	48	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0002	1362	10	10	0	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0003	1362	1	1	0	0	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0004	1362	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0005	1362	1	0	0	0	0	1	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0007	1362	1	0	0	1	0	0	copy fasta	FGG	chr4	154599171	154617656
FGG_chr4_154599171_154617656	0/0	c0008	1362	1	0	0	0	0	1	copy fasta	FGG	chr4	154599171	154617656
FGL1_chr8_17859389_17900524	0/0	c0001	939	126	18	33	64	5	6	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	1/1	c0002	939	119	12	22	54	7	22	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0003	939	47	25	5	14	1	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0004	939	34	33	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0005	939	17	1	5	11	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0006	939	5	4	1	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0007	939	4	0	2	0	2	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0008	939	3	0	0	0	1	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0009	939	2	0	0	0	0	2	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0010	939	2	2	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0011	939	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0012	939	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0013	939	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0014	939	1	0	0	1	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0015	939	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0016	939	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL1_chr8_17859389_17900524	0/0	c0017	939	1	1	0	0	0	0	copy fasta	FGL1	chr8	17859389	17900524
FGL2_chr7_77188369_77204819	1/1	c0001	1320	316	81	55	127	15	36	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0002	1320	100	5	20	67	1	7	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0003	1320	8	7	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0004	1320	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0005	1320	1	0	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0007	1320	1	0	1	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0008	1320	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819