JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FGL2_chr7_77188369_77204819	0/0	c0009	1320	1	0	0	1	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0010	1320	1	0	0	0	0	1	copy fasta	FGL2	chr7	77188369	77204819
FGL2_chr7_77188369_77204819	0/0	c0011	1320	1	1	0	0	0	0	copy fasta	FGL2	chr7	77188369	77204819
FGR_chr1_27607064_27640185	1/1	c0001	1590	267	86	62	76	14	27	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0002	1590	3	0	0	0	0	3	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0003	1590	2	2	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0004	1590	2	2	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0006	1590	1	0	0	1	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0007	1590	1	0	0	1	0	0	copy fasta	FGR	chr1	27607064	27640185
FGR_chr1_27607064_27640185	0/0	c0008	1590	1	1	0	0	0	0	copy fasta	FGR	chr1	27607064	27640185
FHAD1_chr1_15242223_15403328	0/0	c0001	4440	26	3	7	12	0	4	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	1/0	c0002	4440	23	2	2	12	1	5	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0003	4440	15	2	1	9	1	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0004	4440	15	0	4	10	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0005	4440	8	1	2	1	3	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0006	4440	8	1	0	6	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0007	4440	6	0	1	4	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0008	4440	5	0	0	2	0	3	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0009	4440	5	0	0	5	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0010	4440	4	1	0	1	2	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0011	4440	4	1	0	1	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0012	4440	4	4	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/1	c0013	4440	4	0	2	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0014	4440	4	0	1	2	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0015	4440	3	0	3	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0016	4440	3	0	1	1	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0017	4440	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0018	4440	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0019	4440	3	1	0	1	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0020	4440	3	3	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0021	4440	3	0	1	1	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0022	4440	3	1	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0023	4440	3	0	0	3	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0024	4440	3	0	0	3	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0025	4440	2	0	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0026	4440	2	0	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0027	4440	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0028	4440	2	0	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0029	4440	2	0	1	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0030	4440	2	0	0	0	0	2	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0031	4440	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0032	4440	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0033	4440	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0034	4440	2	0	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0035	4440	2	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0036	4440	2	0	1	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0037	4440	2	0	2	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0038	4440	2	2	0	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0039	4440	2	0	0	0	0	2	copy fasta	FHAD1	chr1	15242223	15403328