JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
FHAD1_chr1_15242223_15403328	0/0	c0040	4440	2	1	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0041	4440	2	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0042	4440	2	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0043	4440	2	0	2	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0044	4440	2	0	0	1	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0045	4440	2	0	0	2	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0046	4440	2	0	0	2	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0047	4440	2	0	0	2	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0048	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0049	4440	1	0	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0050	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0051	4440	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0052	4463	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0053	4440	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0054	4440	1	0	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0055	4440	1	0	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0056	4440	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0057	4440	1	0	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0058	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0059	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0060	4440	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0061	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0062	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0063	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0064	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0065	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0066	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0067	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0068	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0069	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0070	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0071	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0072	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0073	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0074	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0075	4440	1	0	0	0	1	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0076	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0077	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0078	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0079	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0080	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0081	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0082	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0083	4440	1	0	0	1	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0084	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0085	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0086	4440	1	0	1	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0087	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0088	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328
FHAD1_chr1_15242223_15403328	0/0	c0089	4440	1	1	0	0	0	copy fasta	FHAD1	chr1	15242223	15403328