JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FHDC1_chr4_152931323_152984671	0/0	c0006	3432	9	0	0	9	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0007	3432	6	6	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0008	3432	5	0	2	0	3	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0009	3432	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0010	3432	4	4	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0011	3432	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0012	3432	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0013	3432	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0014	3432	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0015	3432	3	0	0	3	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0016	3432	3	3	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0017	3432	2	0	2	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0018	3432	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0019	3432	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0020	3432	2	0	0	0	0	2	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0021	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0022	3432	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0023	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0024	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0025	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0026	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0027	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0028	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0029	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0030	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0031	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0032	3432	1	0	0	0	1	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0033	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0034	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0035	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0036	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0037	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0038	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0039	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0040	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0041	3432	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0042	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0043	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0044	3432	1	0	1	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0045	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0046	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0047	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0048	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0049	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0050	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0051	3432	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0052	3432	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0053	3432	1	0	0	1	0	0	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0054	3444	1	0	0	0	0	1	copy fasta	FHDC1	chr4	152931323	152984671
FHDC1_chr4_152931323_152984671	0/0	c0055	3432	1	1	0	0	0	0	copy fasta	FHDC1	chr4	152931323	152984671