JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FHIP1A_chr4_151404176_151675503	1/1	c0001	3123	159	43	27	69	4	14	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0002	3123	70	18	16	30	0	6	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0003	3123	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0004	3123	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0005	3123	3	3	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0006	3123	2	0	1	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0007	3123	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0008	3123	1	0	0	0	1	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0009	3123	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0010	3123	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0011	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0012	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0013	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0014	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0015	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0016	3123	1	1	0	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0017	3123	1	0	0	1	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1A_chr4_151404176_151675503	0/0	c0018	3123	1	0	1	0	0	0	copy fasta	FHIP1A	chr4	151404176	151675503
FHIP1B_chr11_6206345_6239636	0/1	c0001	2919	128	24	16	72	2	13	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0002	2919	89	4	31	39	5	10	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0003	2919	42	27	9	2	3	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0004	2919	33	4	2	23	1	3	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	1/0	c0005	2919	28	15	3	3	0	6	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0006	2919	17	1	3	11	1	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0007	2919	8	0	1	3	1	3	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0008	2919	6	0	3	1	2	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0009	2919	5	0	1	1	1	2	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0010	2919	5	0	0	5	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0011	2919	4	0	3	0	0	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0012	2919	3	3	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0013	2919	2	0	2	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0014	2919	2	2	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0015	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0016	2919	1	0	0	0	0	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0017	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0018	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0019	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0020	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0021	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0022	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0023	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0024	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0025	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0026	2919	1	0	0	0	0	1	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0027	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0028	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0029	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0030	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0031	2919	1	1	0	0	0	0	copy fasta	FHIP1B	chr11	6206345	6239636
FHIP1B_chr11_6206345_6239636	0/0	c0032	2919	1	0	0	1	0	0	copy fasta	FHIP1B	chr11	6206345	6239636