JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FHIP2A_chr10_114816780_114869717	1/0	c0001	2298	194	62	33	74	7	17	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0002	2298	65	5	10	47	0	3	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/1	c0003	2298	56	17	20	1	6	11	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0004	2298	3	3	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0005	2298	3	3	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0006	2298	3	0	0	3	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0007	2298	2	0	2	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0008	2298	1	0	0	0	1	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0009	2298	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0010	2298	1	0	1	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0011	2298	1	1	0	0	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0012	2298	1	0	0	0	0	1	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2A_chr10_114816780_114869717	0/0	c0013	2298	1	0	0	1	0	0	copy fasta	FHIP2A	chr10	114816780	114869717
FHIP2B_chr8_22084150_22109911	1/1	c0001	2232	227	51	59	79	15	21	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0002	2232	117	33	13	53	2	16	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0003	2232	15	0	1	13	0	1	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0004	2232	7	7	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0005	2232	3	1	2	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0006	2232	3	1	2	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0007	2232	2	0	0	0	0	2	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0008	2232	2	0	0	2	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0009	2232	2	0	0	2	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0010	2232	2	0	1	0	1	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0011	2232	2	1	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0012	2232	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0013	2274	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0014	2232	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0015	2232	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0016	2232	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0017	2232	1	0	1	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0018	2232	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0019	2232	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0020	2232	1	1	0	0	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0021	2232	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0022	2232	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIP2B_chr8_22084150_22109911	0/0	c0023	2232	1	0	0	1	0	0	copy fasta	FHIP2B	chr8	22084150	22109911
FHIT_chr3_59742277_61256452	0/0	c0001	444	36	24	11	0	0	1	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	c0002	444	7	1	4	0	0	2	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	c0003	444	2	0	1	0	0	1	copy fasta	FHIT	chr3	59742277	61256452
FHIT_chr3_59742277_61256452	0/0	c0004	444	1	1	0	0	0	0	copy fasta	FHIT	chr3	59742277	61256452
FHL1_chrX_136142533_136216354	1/1	c0001	972	209	47	32	97	7	24	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	c0002	972	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	c0003	973	1	0	0	1	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136142533_136216354	0/0	c0004	972	1	1	0	0	0	0	copy fasta	FHL1	chrX	136142533	136216354
FHL1_chrX_136192047_136216354	1/1	c0001	891	290	61	43	142	13	29	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	c0002	891	2	0	0	2	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	c0003	892	1	0	0	1	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	c0004	891	1	0	1	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	c0005	891	1	1	0	0	0	0	copy fasta	FHL1	chrX	136192047	136216354
FHL1_chrX_136192047_136216354	0/0	c0006	891	1	0	0	0	0	1	copy fasta	FHL1	chrX	136192047	136216354