JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FHL2_chr2_105355826_105404051	1/0	c0001	840	384	78	42	210	11	42	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0002	840	26	5	14	1	3	3	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/1	c0003	840	24	1	11	8	2	1	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0004	840	6	6	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0005	840	4	4	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0006	840	1	0	0	1	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0007	840	1	0	1	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0008	840	1	1	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL2_chr2_105355826_105404051	0/0	c0009	840	1	1	0	0	0	0	copy fasta	FHL2	chr2	105355826	105404051
FHL3_chr1_37991770_38010514	0/1	c0001	843	277	74	45	126	8	23	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	1/0	c0002	843	172	19	37	84	8	23	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	c0003	843	4	4	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	c0004	843	2	2	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	c0005	843	2	0	0	0	0	2	copy fasta	FHL3	chr1	37991770	38010514
FHL3_chr1_37991770_38010514	0/0	c0006	843	1	1	0	0	0	0	copy fasta	FHL3	chr1	37991770	38010514
FHL5_chr6_96558128_96623626	0/1	c0001	855	141	38	12	73	2	15	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0002	855	97	3	27	53	4	10	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	1/0	c0003	855	71	26	16	14	3	11	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0004	855	55	9	13	20	5	8	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0005	855	5	5	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0006	855	2	2	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0007	855	1	0	0	1	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0008	855	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0009	855	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0010	855	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0011	855	1	0	0	1	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0012	855	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHL5_chr6_96558128_96623626	0/0	c0013	855	1	1	0	0	0	0	copy fasta	FHL5	chr6	96558128	96623626
FHOD1_chr16_67224389_67252481	1/1	c0001	3495	126	23	40	34	7	20	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0002	3495	25	24	1	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0003	3495	16	15	1	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0004	3495	15	8	1	0	1	5	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0005	3495	9	2	2	5	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0006	3495	3	0	0	0	0	3	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0007	3495	2	0	2	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0008	3495	2	2	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0009	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0010	3495	1	0	0	1	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0011	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0012	3495	1	0	0	1	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0013	3495	1	0	0	1	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0014	3495	1	0	1	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0015	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0016	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0017	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0018	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0019	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD1_chr16_67224389_67252481	0/0	c0020	3495	1	1	0	0	0	0	copy fasta	FHOD1	chr16	67224389	67252481
FHOD3_chr18_36292713_36785220	1/0	c0001	4869	56	17	14	17	2	5	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0002	4869	21	6	6	8	1	0	copy fasta	FHOD3	chr18	36292713	36785220