Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AGAP4_chr10_45820594_45852500	0/0	c0020	2061	3	1	2	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0021	2061	2	0	1	0	1	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0022	2061	2	0	0	2	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0023	2061	2	0	0	0	0	2	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0024	2061	2	2	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0025	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0026	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0027	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0028	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0029	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0030	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0031	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0032	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0033	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0035	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0036	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0037	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0038	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0039	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0040	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0041	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0042	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0043	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0044	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0045	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0046	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0047	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0048	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0049	2061	1	0	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0050	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0051	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0052	2061	1	1	0	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0053	2061	1	0	0	0	0	1	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0054	2061	1	0	1	0	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP4_chr10_45820594_45852500	0/0	c0055	2061	1	0	0	1	0	0	copy fasta	AGAP4	chr10	45820594	45852500
AGAP5_chr10_73669295_73703109	1/1	c0001	2061	175	32	21	99	1	20	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0002	2061	79	26	17	16	6	14	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0003	2061	62	13	6	33	1	9	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0004	2061	14	1	0	13	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0005	2061	12	0	6	6	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0006	2061	4	3	1	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0007	2061	3	3	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0008	2061	3	3	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0009	2061	2	0	0	2	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0010	2061	2	2	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0011	2061	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0012	2061	1	0	0	1	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0013	2061	1	1	0	0	0	0	copy fasta	AGAP5	chr10	73669295	73703109
AGAP5_chr10_73669295_73703109	0/0	c0014	2061	1	0	0	0	0	1	copy fasta	AGAP5	chr10	73669295	73703109