JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FHOD3_chr18_36292713_36785220	0/0	c0003	4869	12	3	1	6	0	2	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0004	4869	8	2	0	5	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0005	4869	6	6	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/1	c0006	4869	5	1	2	0	1	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0007	4869	4	4	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0008	4869	4	3	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0009	4869	3	0	0	0	0	3	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0010	4869	3	3	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0011	4869	3	3	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0012	4869	3	1	2	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0013	4869	3	0	0	2	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0014	4869	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0015	4869	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0016	4869	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0017	4869	2	0	2	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0018	4869	2	2	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0019	4869	2	0	0	1	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0020	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0021	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0022	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0023	4869	1	0	0	1	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0024	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0025	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0026	4869	1	0	0	0	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0027	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0028	4869	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0029	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0030	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0031	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0032	4869	1	0	0	1	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0033	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0034	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0035	4869	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0036	4869	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0037	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0038	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0039	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0040	4869	1	0	1	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0041	4869	1	0	0	0	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0042	4869	1	1	0	0	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0043	4869	1	0	0	0	0	1	copy fasta	FHOD3	chr18	36292713	36785220
FHOD3_chr18_36292713_36785220	0/0	c0044	4869	1	0	0	1	0	0	copy fasta	FHOD3	chr18	36292713	36785220
FH_chr1_241492603_241524755	1/1	c0001	1533	354	70	62	173	12	35	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0002	1533	21	1	1	16	0	3	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0003	1533	17	17	0	0	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0004	1533	6	0	0	6	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0005	1533	4	4	0	0	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0006	1533	2	1	1	0	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	FH	chr1	241492603	241524755
FH_chr1_241492603_241524755	0/0	c0008	1533	1	1	0	0	0	0	copy fasta	FH	chr1	241492603	241524755