JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FIBCD1_chr9_130897440_130944247	0/0	c0001	1386	237	73	44	93	5	22	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	1/1	c0002	1386	130	15	27	56	11	19	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0003	1386	3	3	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0004	1386	2	0	2	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0005	1386	2	1	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0006	1386	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0007	1386	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0008	1386	1	0	0	0	0	1	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0010	1386	1	0	1	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0012	1386	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBCD1_chr9_130897440_130944247	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	FIBCD1	chr9	130897440	130944247
FIBIN_chr11_26989112_27002087	1/1	c0001	636	432	94	82	198	16	40	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	c0002	636	8	0	0	8	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	c0003	636	5	5	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	c0004	636	4	0	0	0	0	4	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	c0005	636	2	0	0	2	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBIN_chr11_26989112_27002087	0/0	c0006	636	1	1	0	0	0	0	copy fasta	FIBIN	chr11	26989112	27002087
FIBP_chr11_65878740_65893471	1/1	c0001	1074	375	89	70	167	12	35	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	c0002	1074	9	0	0	9	0	0	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	c0003	1074	1	1	0	0	0	0	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	c0004	1074	1	1	0	0	0	0	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	c0005	1074	1	0	0	0	0	1	copy fasta	FIBP	chr11	65878740	65893471
FIBP_chr11_65878740_65893471	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	FIBP	chr11	65878740	65893471
FICD_chr12_108510277_108526210	1/1	c0001	1377	390	64	62	208	12	42	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0002	1377	17	7	1	2	1	6	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0003	1377	14	14	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0004	1377	6	1	4	0	1	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0005	1377	6	5	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0006	1377	4	0	0	4	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0007	1377	4	3	1	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0008	1377	3	0	1	0	2	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0009	1377	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FICD_chr12_108510277_108526210	0/0	c0010	1377	1	1	0	0	0	0	copy fasta	FICD	chr12	108510277	108526210
FIG4_chr6_109686296_109830426	1/1	c0001	2724	114	18	23	60	3	8	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0002	2724	83	56	6	16	1	4	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0003	2724	74	4	19	37	4	10	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0004	2724	38	6	8	14	2	8	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0005	2724	31	0	7	23	0	1	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0006	2724	6	0	0	4	0	2	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0007	2724	5	0	0	3	0	2	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0008	2724	5	0	1	1	0	3	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0009	2724	3	3	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0010	2724	2	0	2	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0011	2724	1	0	1	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0012	2724	1	0	0	1	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0013	2724	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0014	2724	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0015	2724	1	0	0	1	0	0	copy fasta	FIG4	chr6	109686296	109830426