JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FIG4_chr6_109686296_109830426	0/0	c0016	2724	1	0	1	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0017	2724	1	0	0	1	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0018	2724	1	0	0	1	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIG4_chr6_109686296_109830426	0/0	c0019	2724	1	1	0	0	0	0	copy fasta	FIG4	chr6	109686296	109830426
FIGLA_chr2_70772310_70795643	0/0	c0001	660	343	75	49	183	11	25	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	1/1	c0002	660	69	3	21	21	7	15	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	c0003	660	16	13	2	0	0	1	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	c0004	660	7	0	0	0	0	7	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	c0005	660	1	0	0	1	0	0	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	c0006	660	1	0	0	1	0	0	copy fasta	FIGLA	chr2	70772310	70795643
FIGLA_chr2_70772310_70795643	0/0	c0007	660	1	1	0	0	0	0	copy fasta	FIGLA	chr2	70772310	70795643
FIGNL1_chr7_50439133_50455350	1/1	c0001	2025	386	75	61	196	18	34	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0002	2025	17	0	7	5	0	5	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0003	2025	6	6	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0004	2025	4	4	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0005	2025	3	0	0	0	0	3	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0006	2025	2	2	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0007	2025	1	0	1	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0008	2025	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0009	2025	1	0	1	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0010	2025	1	0	0	1	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0011	2025	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL1_chr7_50439133_50455350	0/0	c0012	2025	1	1	0	0	0	0	copy fasta	FIGNL1	chr7	50439133	50455350
FIGNL2_chr12_51812899_51853718	0/1	c0001	1962	301	42	55	169	15	19	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	1/0	c0002	1962	43	14	10	2	1	15	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0003	1962	26	10	3	1	0	12	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0004	1962	7	7	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0005	1962	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0006	1962	5	5	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0007	1962	4	4	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0008	1962	2	0	0	0	2	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0009	1962	2	0	0	2	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0010	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0011	1962	1	0	0	0	0	1	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0012	1962	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0013	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0014	1962	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0015	1962	1	0	0	0	0	1	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0016	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0017	1962	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0018	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0019	1962	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0020	1962	1	1	0	0	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0021	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGNL2_chr12_51812899_51853718	0/0	c0022	1962	1	0	0	1	0	0	copy fasta	FIGNL2	chr12	51812899	51853718
FIGN_chr2_163597611_163741008	1/1	c0001	2280	238	66	30	106	8	26	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0002	2280	15	14	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0003	2280	6	0	0	6	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0004	2280	2	0	2	0	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0005	2280	1	0	1	0	0	0	copy fasta	FIGN	chr2	163597611	163741008