JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FIGN_chr2_163597611_163741008	0/0	c0006	2280	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0007	2280	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0008	2280	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FIGN_chr2_163597611_163741008	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	FIGN	chr2	163597611	163741008
FILIP1L_chr3_99823811_100119501	1/1	c0001	3573	166	55	30	51	7	21	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0002	3573	74	5	20	27	5	17	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0003	3573	5	5	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0004	3573	3	3	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0005	3573	2	1	1	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0006	3573	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0007	3573	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0008	3573	1	0	1	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0009	3573	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0010	3573	1	1	0	0	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0011	3573	1	0	0	0	0	1	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0012	3573	1	0	0	0	0	1	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1L_chr3_99823811_100119501	0/0	c0013	3573	1	0	0	1	0	0	copy fasta	FILIP1L	chr3	99823811	100119501
FILIP1_chr6_75303090_75498800	1/1	c0001	3642	278	60	41	136	10	29	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0002	3642	13	13	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0003	3642	3	1	2	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0004	3642	2	0	0	2	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0005	3642	2	2	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0006	3642	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0007	3642	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0008	3642	1	0	0	1	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0009	3642	1	0	0	0	0	1	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0010	3642	1	0	0	1	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0011	3642	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0012	3642	1	0	1	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FILIP1_chr6_75303090_75498800	0/0	c0013	3642	1	1	0	0	0	0	copy fasta	FILIP1	chr6	75303090	75498800
FIP1L1_chr4_53372641_53465862	1/1	c0001	1785	392	86	66	178	14	46	copy fasta	FIP1L1	chr4	53372641	53465862
FIRRM_chr1_169790040_169859080	1/1	c0001	2562	328	78	45	159	13	31	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0002	2562	54	3	14	29	0	8	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0003	2562	14	0	5	4	2	3	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0004	2562	10	10	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0005	2562	6	0	0	6	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0006	2562	2	0	2	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0007	2562	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0008	2562	1	0	0	0	1	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0009	2562	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0010	2562	1	1	0	0	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0011	2562	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIRRM_chr1_169790040_169859080	0/0	c0012	2562	1	0	0	1	0	0	copy fasta	FIRRM	chr1	169790040	169859080
FIS1_chr7_101234472_101250081	1/1	c0001	459	407	92	58	191	18	46	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0002	459	3	3	0	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0003	459	2	2	0	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0004	459	1	0	0	1	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0005	459	1	0	1	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0006	459	1	0	1	0	0	0	copy fasta	FIS1	chr7	101234472	101250081
FIS1_chr7_101234472_101250081	0/0	c0007	459	1	1	0	0	0	0	copy fasta	FIS1	chr7	101234472	101250081