JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FITM1_chr14_24125659_24137847	1/1	c0001	879	374	77	75	166	16	38	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	c0002	879	8	8	0	0	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	c0003	879	6	5	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	c0004	879	5	4	1	0	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	c0005	879	2	0	0	2	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM1_chr14_24125659_24137847	0/0	c0006	879	1	0	0	1	0	0	copy fasta	FITM1	chr14	24125659	24137847
FITM2_chr20_44297840_44316202	1/1	c0001	789	411	93	68	184	18	46	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	c0002	789	12	0	0	12	0	0	copy fasta	FITM2	chr20	44297840	44316202
FITM2_chr20_44297840_44316202	0/0	c0003	789	1	1	0	0	0	0	copy fasta	FITM2	chr20	44297840	44316202
FIZ1_chr19_55586376_55604517	0/1	c0001	1491	210	67	34	74	9	25	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	1/0	c0002	1491	118	12	18	78	3	6	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0003	1491	82	10	26	30	2	14	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0004	1491	3	3	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0005	1491	3	3	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0006	1491	2	0	2	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0007	1491	2	2	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0008	1491	2	1	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0010	1491	1	0	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0011	1491	1	0	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0013	1491	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0014	1491	1	0	1	0	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0015	1491	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0016	1491	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0017	1491	1	0	0	0	0	1	copy fasta	FIZ1	chr19	55586376	55604517
FIZ1_chr19_55586376_55604517	0/0	c0018	1491	1	0	0	1	0	0	copy fasta	FIZ1	chr19	55586376	55604517
FJX1_chr11_35613460_35625865	1/1	c0001	1314	347	62	71	173	12	27	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0002	1314	48	3	4	32	0	9	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0003	1314	32	0	8	16	2	6	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0004	1314	25	25	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0005	1314	4	4	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0006	1314	2	2	0	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0007	1302	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0009	1314	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FJX1_chr11_35613460_35625865	0/0	c0010	1314	1	0	1	0	0	0	copy fasta	FJX1	chr11	35613460	35625865
FKBP10_chr17_41808004_41828213	1/1	c0001	1749	341	66	71	151	13	38	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0002	1749	33	8	7	14	1	3	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0003	1749	4	4	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0004	1749	4	4	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0005	1749	2	2	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0006	1749	1	0	1	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0007	1749	1	0	0	1	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0008	1749	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0010	1749	1	0	0	0	0	1	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0011	1749	1	0	1	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0012	1749	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213
FKBP10_chr17_41808004_41828213	0/0	c0013	1749	1	1	0	0	0	0	copy fasta	FKBP10	chr17	41808004	41828213