JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FKBP11_chr12_48916963_48930492	1/1	c0001	606	382	94	78	150	16	42	copy fasta	FKBP11	chr12	48916963	48930492
FKBP14_chr7_30005587_30031702	1/1	c0001	636	299	82	57	110	16	32	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0002	636	20	3	2	14	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0003	636	3	2	1	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0004	636	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0005	636	1	0	0	0	0	1	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0006	636	1	1	0	0	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP14_chr7_30005587_30031702	0/0	c0007	636	1	0	0	1	0	0	copy fasta	FKBP14	chr7	30005587	30031702
FKBP15_chr9_113156006_113226277	1/1	c0001	3660	98	19	9	63	1	4	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0002	3660	76	15	16	37	3	5	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0003	3660	49	0	6	32	4	7	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0004	3660	41	2	9	24	0	6	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0005	3660	39	16	17	3	1	2	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0006	3660	32	0	4	20	1	7	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0007	3663	12	4	1	6	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0008	3660	10	10	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0009	3660	6	5	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0010	3660	6	0	0	6	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0011	3660	6	6	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0012	3660	5	0	3	0	2	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0013	3663	4	4	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0014	3660	3	0	0	3	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0015	3660	2	0	0	2	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0016	3660	2	0	0	2	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0017	3660	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0018	3660	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0019	3660	1	0	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0020	3660	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0021	3660	1	0	0	0	1	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0022	3660	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0023	3663	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0024	3663	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0025	3660	1	0	0	0	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0026	3660	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0027	3660	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0028	3660	1	0	0	0	1	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0029	3663	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0030	3660	1	0	1	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0031	3660	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0032	3663	1	0	0	0	0	1	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0033	3660	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0034	3660	1	0	0	1	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP15_chr9_113156006_113226277	0/0	c0035	3663	1	1	0	0	0	0	copy fasta	FKBP15	chr9	113156006	113226277
FKBP1A_chr20_1363978_1398054	1/1	c0001	327	388	86	62	172	16	50	copy fasta	FKBP1A	chr20	1363978	1398054
FKBP1B_chr2_24044741_24068681	1/1	c0001	327	304	84	58	104	18	38	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP1B_chr2_24044741_24068681	0/0	c0002	327	6	0	0	6	0	0	copy fasta	FKBP1B	chr2	24044741	24068681
FKBP2_chr11_64236095_64249132	0/1	c0001	429	309	79	69	120	6	34	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	1/0	c0002	429	12	11	0	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	c0003	429	9	2	7	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP2_chr11_64236095_64249132	0/0	c0004	429	1	1	0	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132