JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FKBP2_chr11_64236095_64249132	0/0	c0005	429	1	1	0	0	0	0	copy fasta	FKBP2	chr11	64236095	64249132
FKBP3_chr14_45110599_45139481	1/1	c0001	675	302	85	39	128	18	30	copy fasta	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	0/0	c0002	675	1	0	1	0	0	0	copy fasta	FKBP3	chr14	45110599	45139481
FKBP3_chr14_45110599_45139481	0/0	c0003	675	1	1	0	0	0	0	copy fasta	FKBP3	chr14	45110599	45139481
FKBP4_chr12_2789970_2810423	1/1	c0001	1380	374	88	60	177	9	38	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0002	1380	4	0	3	0	1	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0003	1380	4	4	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0004	1380	1	0	0	1	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0005	1380	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0006	1380	1	1	0	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP4_chr12_2789970_2810423	0/0	c0007	1380	1	0	1	0	0	0	copy fasta	FKBP4	chr12	2789970	2810423
FKBP5_chr6_35568590_35693915	1/1	c0001	1374	257	54	44	105	14	38	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	c0002	1374	22	0	5	17	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	c0003	1374	20	19	1	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	c0004	1374	1	0	0	1	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	c0005	1374	1	1	0	0	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP5_chr6_35568590_35693915	0/0	c0006	1374	1	0	0	1	0	0	copy fasta	FKBP5	chr6	35568590	35693915
FKBP6_chr7_73323161_73363625	0/1	c0001	984	297	77	54	126	7	32	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	1/0	c0002	984	14	1	6	3	3	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	c0003	984	4	0	0	4	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	c0004	984	3	3	0	0	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	c0005	984	1	1	0	0	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP6_chr7_73323161_73363625	0/0	c0006	984	1	0	0	1	0	0	copy fasta	FKBP6	chr7	73323161	73363625
FKBP7_chr2_178458664_178483600	1/1	c0001	669	395	86	64	196	12	35	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	c0002	669	2	2	0	0	0	0	copy fasta	FKBP7	chr2	178458664	178483600
FKBP7_chr2_178458664_178483600	0/0	c0003	669	1	0	0	0	0	1	copy fasta	FKBP7	chr2	178458664	178483600
FKBP8_chr19_18526763_18548573	1/1	c0001	1242	351	68	71	158	12	40	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0002	1242	23	22	1	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0003	1242	3	0	3	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0004	1242	2	0	2	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0005	1242	2	0	1	0	0	1	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0006	1242	2	0	0	2	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0007	1242	1	0	0	0	0	1	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0008	1242	1	0	0	1	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0009	1242	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0010	1242	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0011	1242	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0012	1242	1	0	0	1	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP8_chr19_18526763_18548573	0/0	c0013	1242	1	1	0	0	0	0	copy fasta	FKBP8	chr19	18526763	18548573
FKBP9_chr7_32952440_33011928	1/1	c0001	1713	421	95	67	205	11	41	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0002	1713	3	0	1	0	1	1	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0003	1713	2	2	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0004	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0005	1713	1	0	0	1	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0006	1713	1	1	0	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBP9_chr7_32952440_33011928	0/0	c0007	1713	1	0	1	0	0	0	copy fasta	FKBP9	chr7	32952440	33011928
FKBPL_chr6_32123707_32135288	0/1	c0001	1050	373	69	72	179	15	37	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0002	1050	35	15	4	3	3	10	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0003	1062	7	0	5	1	0	1	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0004	1050	4	1	0	3	0	0	copy fasta	FKBPL	chr6	32123707	32135288