JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
FKBPL_chr6_32123707_32135288	0/0	c0005	1050	3	0	3	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0006	1050	1	1	0	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKBPL_chr6_32123707_32135288	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	FKBPL	chr6	32123707	32135288
FKRP_chr19_46741057_46763575	1/1	c0001	1488	336	67	70	154	14	29	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0002	1488	75	21	15	25	2	12	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0003	1488	4	4	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0004	1488	3	0	0	0	0	3	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0005	1488	2	2	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0006	1488	2	1	1	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0007	1488	2	0	0	0	0	2	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0008	1488	1	0	0	0	0	1	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0009	1488	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0010	1488	1	1	0	0	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0011	1488	1	0	0	0	0	1	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0012	1488	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKRP_chr19_46741057_46763575	0/0	c0013	1488	1	0	0	1	0	0	copy fasta	FKRP	chr19	46741057	46763575
FKTN_chr9_105553131_105646118	1/0	c0001	1386	291	49	41	164	8	28	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/1	c0002	1386	47	14	12	14	4	2	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0003	1386	13	13	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0004	1386	8	0	6	0	2	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0005	1386	5	5	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0006	1386	3	3	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0007	1386	3	3	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0008	1386	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0011	1386	1	0	1	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0014	1386	1	1	0	0	0	0	copy fasta	FKTN	chr9	105553131	105646118
FKTN_chr9_105553131_105646118	0/0	c0015	1386	1	0	0	1	0	0	copy fasta	FKTN	chr9	105553131	105646118
FLACC1_chr2_201283271_201362345	0/1	c0001	1269	251	67	32	118	5	28	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	1/0	c0002	1269	97	15	30	40	2	9	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0003	1269	12	3	5	1	3	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0004	1269	2	2	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0005	1269	1	0	1	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0006	1269	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0007	1269	1	0	0	0	0	1	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0009	1269	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0010	1269	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0011	1269	1	1	0	0	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLACC1_chr2_201283271_201362345	0/0	c0012	1269	1	0	0	1	0	0	copy fasta	FLACC1	chr2	201283271	201362345
FLAD1_chr1_154978344_154998111	1/1	c0001	1764	278	94	54	78	14	36	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	c0002	1764	3	0	0	3	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	c0003	1764	2	0	0	2	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLAD1_chr1_154978344_154998111	0/0	c0004	1764	1	0	0	1	0	0	copy fasta	FLAD1	chr1	154978344	154998111
FLCN_chr17_17207212_17242168	1/1	c0001	1740	345	73	72	141	16	41	copy fasta	FLCN	chr17	17207212	17242168
FLCN_chr17_17207212_17242168	0/0	c0002	1740	12	10	2	0	0	0	copy fasta	FLCN	chr17	17207212	17242168